Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 81 / 5e-18 S-locus lectin protein kinase family protein (.1) AT1G11410 79 / 3e-17 S-locus lectin protein kinase family protein (.1) AT1G67520 67 / 3e-13 lectin protein kinase family protein (.1) AT4G21390 67 / 7e-13 B120 S-locus lectin protein kinase family protein (.1) AT4G27290 66 / 1e-12 S-locus lectin protein kinase family protein (.1) AT4G21380 66 / 1e-12 ARK3 receptor kinase 3 (.1) AT1G61610 66 / 2e-12 S-locus lectin protein kinase family protein (.1) AT1G11280 64 / 5e-12 S-locus lectin protein kinase family protein (.1.2.3.4) AT4G27300 63 / 1e-11 S-locus lectin protein kinase family protein (.1) AT1G11300 63 / 2e-11 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020078 [exp] 90 / 4e-22 AT1G11340 257 / 1e-80 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 87 / 4e-20 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 87 / 9e-20 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 86 / 2e-19 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 75 / 1e-15 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 74 / 1e-15 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 74 / 3e-15 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10018405 [exp] 72 / 1e-14 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10013245 [exp] 72 / 1e-14 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028701 [exp] 76 / 4e-16 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015400 [exp] 74 / 1e-15 AT4G27290 683 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 74 / 1e-15 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 74 / 2e-15 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 74 / 2e-15 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G024140 [exp] 72 / 8e-15 AT4G23180 497 / 3e-168 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G023700 [exp] 72 / 1e-14 AT4G05200 474 / 3e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.010G025800 [exp] 71 / 1e-14 AT4G27290 828 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G025700 [exp] 71 / 2e-14 AT4G27290 576 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 71 / 2e-14 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002717 pacid=23158706 polypeptide=Lus10002717 locus=Lus10002717.g ID=Lus10002717.BGIv1.0 annot-version=v1.0 ATGAGCTGGAGGGACGAATCGAAGCGACATGGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGTCACTCTGCCACTTACAATACCTTGTCACGTATTTAA GTCGTCTGCAAATGATTCTATCCGCTGCTCGGTGGAAATTAAACTTCAAGGCGGCCCGATGGACTCTTCCGGCCAACGGACTTGGCCAACGACACGTGCC TTTGGGGGCCGGATGGCCCCTACTGCTGGTCGGCAATCGGGCAGCGGACACAGGCGTCGGTGCCAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAAT CCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTACGAATCCATCATAATAAGCGAAGTGAGAGGGAATTCACATTTAC CCTTCTTATCGCTGGATGAGGTCGTTGCTGCCACAAACAATTTCTCCGATAAGAATAGACTTGGAGTGGGTGGCTTTGGCGTCTACCAGGGAGTCGAGGA ATCCAAGAACGAGGTGGAGCTGATTGCAAAGCTACAACCCAGCAATCTAGTTAAGATTTTGGGTTGTGTTGTGCAAGGACAATAG
AA sequence Show only first row Show all	>Lus10002717 pacid=23158706 polypeptide=Lus10002717 locus=Lus10002717.g ID=Lus10002717.BGIv1.0 annot-version=v1.0 MSWRDESKRHGAESQWIVAARSLCHLQYLVTYLSRLQMILSAARWKLNFKAARWTLPANGLGQRHVPLGAGWPLLLVGNRAADTGVGASPDSDLEAFSHN PAHGSFAPLAFQPSAMTNYESIIISEVRGNSHLPFLSLDEVVAATNNFSDKNRLGVGGFGVYQGVEESKNEVELIAKLQPSNLVKILGCVVQGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10002717 [exp]	0	1
					Lus10030678 [exp]	1.4	0.9806
					Lus10007187 [exp]	2.0	0.9772
					Lus10000299 [exp]	2.4	0.7875
					Lus10001550 [exp]	3.5	0.9505
					Lus10008011 [exp]	4.9	0.8659
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10016229 [exp]	5.2	0.7370
					Lus10000298 [exp]	18.2	0.8020
AT4G27410	NAC	RD26, ANAC072	NAC (No Apical Meristem) domai...		Lus10003458 [exp]	18.3	0.6994
					Lus10007186 [exp]	33.5	0.7526
					Lus10039450 [exp]	34.2	0.7069

Compare expression of checked genes

Lus10002717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.