Plant FIBer expression Database

Lus10002718 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54610 583 / 0 ATGCN5, HAG1, HAG01, HAC3, BGT, HAT1, GCN5 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G217400
[exp]
668 / 0 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1)
Potri.002G045900
[exp]
661 / 0 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00439 Bromodomain Bromodomain
CL0257 Acetyltrans PF00583 Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence
>Lus10002718 pacid=23158704 polypeptide=Lus10002718 locus=Lus10002718.g ID=Lus10002718.BGIv1.0 annot-version=v1.0
ATGGACACTCACTCTCACCTAACTGCTCCCAATCGCTCCCGCAGTTCCCAGTCGCCTTCCCCTTCCCACTCCGCTTCCGCTTCCGCTTCCGCCTCCGCCA
CCTCCTCCATGCACAAACGCAAGCTGGCGGCAGCTGCATCGGCGGCTTCTGAAGACCACGCGCCACCGTTCCCTCCATCTTCCTTCTCCGCCGACACTCG
CGACGGCGCTCTGACCTCCAATGACGACCTCGACAGCATCTCTGCGCGCGGCGCCGACTCGGACTCCGACGCCGACGACTCCGATGCTGTTGTTGAGGAG
GACGACGATGAATTCGACAACGACTCTTCTGTGCGTACCTTCACTGCAGCCCGCCTGGAGGCCAATGCCGGCGCCTCGGGCGCTGGCGCTGGCTCCGGTG
GTGGAGTAGGTCCCTCGGGTCGTAATTCGAAGCTGAAATCGGAGAATGCTACGGTTAAGATTGAGAATTTGAGCAGTGGGAAAGATGGAGGAGGTCCTGC
TGGGGCTGGTGCAGGAGGTGCCGCTGCTGCAGGCAGCTCAGAGCCAGGGGCTGTGGTTAAGGAGGACTCTGTCAAGATATTTACCGAGAATTTGCAGACT
AGTGGAGCTTATAGCGCCAGAGAAGAGAGCCTGAAGAAGGAGGAAGAAGCAGGAAGACTCAAGTTTGTATGTGTTTCAAATGACGGTGTTGATGAGCATA
TGGTTTGGTTGATAGGATTGAAGAATATATTTTCCAGGCAACTGCCTAATATGCCCAAGGAGTACATTGTCCGGCTTGTGATGGATAGCCAGAAGTTTGG
AGAAATTGCGTTTTGTGCAATCACAGCGGATGAGCAAGTGAAAGGTTATGGCACAAGATTGATGAATCACCTAAAGCAACATGCACGTGATGTTGATGGG
CTCACACATTTTCTGACATACGCTGATAACAATGCTGTTGGTTATTTTACCAAGCAGGGTTTTACAAAAGAGATCTACTTGGACAAAGACCGATGGCAAG
GATATATTAAGGACTATGATGGAGGTATCCTTATGGAATGTAAAATAAATCCTAAACTTCCATATACCGATCTATCGACTATGGTTCGTAAGCAAAGACA
GGCAATTGATGAAAAGATAAGGGAGCTATCCAATTGCCATATTGTTTACCCAGGGATAGACTTTCAGAAGAAAGAAGCTGGCGTACCGAAAAAGATCTAC
AAAGTTGAGGACATCCCTGGCTTGAGGGAGGCTGGTTGGACTCCTGATCAGTGGGGTCATTCACGGTTCAAAAATTTAAATCCTTCAACAGACAGTACAA
CGAATATCAAACACTGGACAGCCTTCATGCGCTCTCTTTTAAAGGCAATGCATGACCACGTTGATTCTTGGCCATTCAAAGAACCGGTTGATGGCCGCGA
TGTCCCTGATTATTATGACATAATCAAAGATCCTATTGATCTGAAGACGATGATGAAAAGAGTAGAGATGGAGCAATACTATGTAACGTTTGACATGTTT
GTGGCAGACGTCAAACGCATGTTTGCCAATGCACGCACCTACAACTCTCCTGAAACCATTTACTACAAGTGTTCAGTGAGGCATGATCATCCACTAGATG
TCTTTTTTCTCGTTGCGATATTGGTTACCAAATATGTTAAAGTAAACAACTGTGATGAAAATGCAGGTTGGAGTCGCATTTCCAGAGCAAAGTTCAATCT
GGACTACAGGCAGGTGCCAAGATTCAGCAGCAGTGAAAGTGGTACCGTATGTGTATATATAGAATAA
AA sequence
>Lus10002718 pacid=23158704 polypeptide=Lus10002718 locus=Lus10002718.g ID=Lus10002718.BGIv1.0 annot-version=v1.0
MDTHSHLTAPNRSRSSQSPSPSHSASASASASATSSMHKRKLAAAASAASEDHAPPFPPSSFSADTRDGALTSNDDLDSISARGADSDSDADDSDAVVEE
DDDEFDNDSSVRTFTAARLEANAGASGAGAGSGGGVGPSGRNSKLKSENATVKIENLSSGKDGGGPAGAGAGGAAAAGSSEPGAVVKEDSVKIFTENLQT
SGAYSAREESLKKEEEAGRLKFVCVSNDGVDEHMVWLIGLKNIFSRQLPNMPKEYIVRLVMDSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDG
LTHFLTYADNNAVGYFTKQGFTKEIYLDKDRWQGYIKDYDGGILMECKINPKLPYTDLSTMVRKQRQAIDEKIRELSNCHIVYPGIDFQKKEAGVPKKIY
KVEDIPGLREAGWTPDQWGHSRFKNLNPSTDSTTNIKHWTAFMRSLLKAMHDHVDSWPFKEPVDGRDVPDYYDIIKDPIDLKTMMKRVEMEQYYVTFDMF
VADVKRMFANARTYNSPETIYYKCSVRHDHPLDVFFLVAILVTKYVKVNNCDENAGWSRISRAKFNLDYRQVPRFSSSESGTVCVYIE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G54610 ATGCN5, HAG1, H... HISTONE ACETYLTRANSFERASE 1, g... Lus10002718
[exp]
0 1
AT5G08470 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxis... Lus10011485
[exp]
3.7 0.8209
AT5G04895 DEA(D/H)-box RNA helicase fami... Lus10034126
[exp]
6.7 0.8131
AT3G15390 SDE5 silencing defective 5 (.1.2) Lus10018188
[exp]
7.7 0.8057
AT2G34970 Trimeric LpxA-like enzyme (.1) Lus10018991
[exp]
11.3 0.8068
AT5G40840 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(... Lus10022338
[exp]
22.0 0.8136
AT2G26270 unknown protein Lus10009795
[exp]
22.8 0.7426
AT3G11440 MYB AtMYB65 myb domain protein 65 (.1) Lus10026787
[exp]
23.9 0.7862
AT1G80550 Pentatricopeptide repeat (PPR)... Lus10011439
[exp]
25.2 0.7826
AT3G27670 RST1 RESURRECTION1, ARM repeat supe... Lus10013074
[exp]
31.3 0.7810
AT4G16570 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN A... Lus10004715
[exp]
31.8 0.8010

Lus10002718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.