Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54640 437 / 2e-155 TRP3, TSA1 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) AT4G02610 411 / 9e-146 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024849 [exp] 503 / 0 AT4G02610 447 / 7e-160 Aldolase-type TIM barrel family protein (.1) Lus10018760 [exp] 498 / 8e-179 AT4G02610 434 / 1e-154 Aldolase-type TIM barrel family protein (.1) Lus10024848 [exp] 431 / 1e-147 AT4G02610 421 / 3e-144 Aldolase-type TIM barrel family protein (.1) Lus10014725 [exp] 268 / 3e-90 AT4G02610 238 / 1e-79 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217700 [exp] 454 / 4e-162 AT3G54640 435 / 9e-155 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) Potri.002G045700 [exp] 452 / 2e-161 AT3G54640 432 / 9e-154 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00290 [flax] [poplar] Trp_syntA Tryptophan synthase alpha chain
Representative CDS sequence Show only first row Show all	>Lus10002719 pacid=23158709 polypeptide=Lus10002719 locus=Lus10002719.g ID=Lus10002719.BGIv1.0 annot-version=v1.0 ATGGCTACTGCTCTGAAATCAACCATTACCTTCAATCAGCTTAACAAACCCGATGTCAATCCCTCCCCCGCTTTCTCTCCTCGGAGGCCCGACTTCGTCC CCGTCAGGCGACTCCGCCAGCTGGCACCCATGGCTGCTCTCACCGCAACTCCCTCAACAATCGGCCTATCCGAAACTTTCTCCAATCTGAAAAGGCAAGG CAAAATGGCATTCATCCCATACATCACTGCTGGTGACCCGGACCTTTCAGTTACTGCGGAAGCTTTGAAAGTGTTGGACAGGTGTGGTTCTGACATAATC GAGCTTGGTGTTCCATACTCGGATCCTTTGGCTGATGGCCCAGTTATCCAGGCAGCGGCGACACGCTCTTTAGCTAGAGGAACCAATTTCGACTCCATCT TATTGATGTTGAAGAAGGTTGTTCCAGATATATCTGCTCCTATTGCTTTGTTCACATACTACAATCCTATCCTGAAGCGTGGAATTGGAGAGTTTATGTC CACTATGCAGGACACTGGGATACACGGACTTGTCGTTCCGGATGTTCCTCTAGAAGAGACTGAGCTTCTGAGGAATGAAGCTTTGAAGAATAAGATCGAG CTGGTACTCCTTACAACACCCACTACCCCAACAGACCGAATGAAAGCTATTGTAGAAGCTTCTGAGGGATTTATTTATCTGGTAAGCTCGATTGGAGTCA CCGGTGCCCGAGCATCTGTAAGCAACAGAGTAGAATCCCTTTTGCAAGAAATAAAGAAGGCAACAACGAAGCCGGTAGCTGTCGGATTTGGGATATCAAA GCCTGAACATGTCCAGCAGGTGGCGGGATGGGGTGCTGATGGCGTGATCGTAGGCAGTGCTATGGTGAAGTTGCTGGGTGAAGCCAAGTCTCCTGATGAA GGACTGCAGGAGTTGGAGAAGTTCACCAAATCGCTAAAAGCTGCACTTCCATAA
AA sequence Show only first row Show all	>Lus10002719 pacid=23158709 polypeptide=Lus10002719 locus=Lus10002719.g ID=Lus10002719.BGIv1.0 annot-version=v1.0 MATALKSTITFNQLNKPDVNPSPAFSPRRPDFVPVRRLRQLAPMAALTATPSTIGLSETFSNLKRQGKMAFIPYITAGDPDLSVTAEALKVLDRCGSDII ELGVPYSDPLADGPVIQAAATRSLARGTNFDSILLMLKKVVPDISAPIALFTYYNPILKRGIGEFMSTMQDTGIHGLVVPDVPLEETELLRNEALKNKIE LVLLTTPTTPTDRMKAIVEASEGFIYLVSSIGVTGARASVSNRVESLLQEIKKATTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAKSPDE GLQELEKFTKSLKAALP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Lus10002719 [exp]	0	1
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037767 [exp]	11.3	0.7333
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10017838 [exp]	11.6	0.6772
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10017296 [exp]	16.7	0.7083
AT4G32915			unknown protein		Lus10006882 [exp]	26.5	0.6947
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	36.3	0.6808
AT1G64910			UDP-Glycosyltransferase superf...		Lus10002350 [exp]	40.5	0.6019
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005015 [exp]	44.9	0.5977
AT1G76140			Prolyl oligopeptidase family p...		Lus10021835 [exp]	45.2	0.6369
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	52.5	0.6652
AT2G37960			unknown protein		Lus10027749 [exp]	62.7	0.6267

Compare expression of checked genes

Lus10002719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.