Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02590 312 / 1e-106 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 275 / 7e-92 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G24260 171 / 8e-51 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G58010 169 / 1e-50 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G30980 164 / 9e-49 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G50915 78 / 2e-16 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G10120 77 / 6e-16 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G09530 78 / 8e-16 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT5G48560 76 / 3e-15 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G07340 76 / 3e-15 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024850 [exp] 409 / 4e-145 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 371 / 2e-129 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014726 [exp] 320 / 2e-111 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 228 / 8e-73 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 228 / 3e-72 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 175 / 3e-52 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10036286 [exp] 160 / 3e-47 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10033592 [exp] 78 / 2e-16 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10006491 [exp] 78 / 6e-16 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217800 [exp] 375 / 3e-131 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G045400 [exp] 365 / 3e-127 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G053500 [exp] 262 / 1e-86 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 240 / 8e-78 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.006G186600 [exp] 181 / 2e-53 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.018G109500 [exp] 179 / 1e-52 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 158 / 7e-45 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.013G001300 [exp] 80 / 2e-16 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G001800 [exp] 80 / 2e-16 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G146500 [exp] 79 / 3e-16 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10002720 pacid=23158717 polypeptide=Lus10002720 locus=Lus10002720.g ID=Lus10002720.BGIv1.0 annot-version=v1.0 ATGGCCGGCAACCCTTCCGACACTCCTTCCGACGATTTCCTCCAGGAAATCCTCGGCCTCCAGAGCTTCGCCTCCGCCGATCCTTCACTCGATGCCTCCG CACAACCTCCGATGTTTCTGCAGCTCAGTTCTGGCGACCCCTCCGCTGCCGGAATCACTTCCCTCACTGGCTCCGCTGCCGCCGGTGATACTTCGGGGTT CCACGGGTTTCCCTTAGGACTCAGCTTGGACCACCAAGGGAACAACAACGGTGGGTTTATGAAGCACGAGGATGCATCCGGCAGCGGGAAAAGGTTCCGT GACGACGTCCTTGACGGCAGAGTTTCCATCTCCAAAAATATTTTTCATCGCCAACAAATGCCCACATCTGTACCTGCAGCCCCACATCCTCCAGCAATGC GTCCAAGGGTGAGGGCGAGAAGAGGACAAGCCACAGATCCACACAGTATCGCTGAACGTTTGCGCCGAGAGAAAATAGCAGAAAGAATTAGGGCATTGCA GGAGTTGGTGCCTAGTGTCAACAAGACAGATAGGGCTGCCATGCTCGATGAAATTGTGGATTATGTTAAGTTCCTCAGACTTCAAGTCAAGGTTCTTAGC ATGAGTAGGCTAGGAGGAGCTGGTGCAGTAGCGCCACTTGTAACGGACATCCCACTATCATCAGTCGAGGATGAAAATGGTGAAGGTGGGAGAAATCAAC CAGCGTGGGAGAAGTGGTCCAACGACGGAACAGAGAAACAAGTGGCGAAACTGATGGAAGAAAATGTCGGTGCGGCAATGCAGTTTCTACAATCAAAGGC ACTCTGCATCATGCCAATCTCCTTGGCATCAGCAATCTACCATACTCAATCGCAGGATCCCCCATCCATTGTTAAACCAGAAGCGAATCCACCCTCATAG
AA sequence Show only first row Show all	>Lus10002720 pacid=23158717 polypeptide=Lus10002720 locus=Lus10002720.g ID=Lus10002720.BGIv1.0 annot-version=v1.0 MAGNPSDTPSDDFLQEILGLQSFASADPSLDASAQPPMFLQLSSGDPSAAGITSLTGSAAAGDTSGFHGFPLGLSLDHQGNNNGGFMKHEDASGSGKRFR DDVLDGRVSISKNIFHRQQMPTSVPAAPHPPAMRPRVRARRGQATDPHSIAERLRREKIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLS MSRLGGAGAVAPLVTDIPLSSVEDENGEGGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQSQDPPSIVKPEANPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10002720 [exp]	0	1
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040255 [exp]	3.5	0.7858
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10014726 [exp]	4.5	0.7641
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10007898 [exp]	7.7	0.7821
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Lus10016090 [exp]	7.9	0.7694
AT5G41620			unknown protein		Lus10028746 [exp]	13.7	0.7236
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10007127 [exp]	15.2	0.7337
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10017055 [exp]	23.9	0.7064
					Lus10007510 [exp]	24.4	0.7037
AT3G43660			Vacuolar iron transporter (VIT...		Lus10028596 [exp]	27.8	0.7579
AT3G25280			Major facilitator superfamily ...		Lus10038222 [exp]	34.3	0.6916

Compare expression of checked genes

Lus10002720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.