Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02580 398 / 7e-142 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014727 [exp] 493 / 2e-179 AT4G02580 438 / 1e-157 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Lus10018762 [exp] 460 / 2e-166 AT4G02580 439 / 5e-158 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Lus10024851 [exp] 443 / 4e-159 AT4G02580 418 / 2e-149 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218000 [exp] 428 / 9e-154 AT4G02580 460 / 2e-166 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Potri.002G045200 [exp] 427 / 2e-153 AT4G02580 458 / 8e-166 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF01257 [flax] [poplar] 2Fe-2S_thioredx Thioredoxin-like [2Fe-2S] ferredoxin
Representative CDS sequence Show only first row Show all	>Lus10002721 pacid=23158701 polypeptide=Lus10002721 locus=Lus10002721.g ID=Lus10002721.BGIv1.0 annot-version=v1.0 ATGCTAGGTCGTCTGGCAGCCACGCGCCTCCAGGAGATCCATCAAGCTTTCCGTGGAGCTGCTCAGAGTTCCCGCTTGTTCTCGACTGCTCTGAACTACC ACATTGATTCTCCGGATAATCAACCTGACACACCATGGGAGTTCAATGCCACAAACCAAGAGAAGGTTAAAGAGATAATATCACATTACCCATCCAACTA CAAGCAATCTGCAGTTATTCCGCTGCTAGATCTGGCACAGCAGCAGCATGGAGGATGGCTTCCAGTTTCAGCGATGAATGCAGTTGCCAAAGTTATTGGA GTTGCTCCCATCCGTGTGTACGAAGTTGCAACATTCTATTCCATGTTCAACCGGACACCTGTAGGCAAGTACCACCTTTTAGTGTGTGGAACAACACCAT GCATGATCCGTGGGTCTCGAGAAATTGAAGATGCACTTGTGAAGCATTTGGGAGTGAAACGCAATGAAGTAACAAAGGACGGCCTTTTCTCTATTGGAGA AATGGAATGTATGGGCTCCTGTGTAAATGCACCAATGATTACCGTTGCAGATTACTCTAATGGATCAGAAGGATACTCGTATAATTATTATGAAGATGTC TCTCCAAAACGTGTTGTTGAGATAGTTGAAATGCTGAGGAGAGGGGAAAAATTGCCAGCTGGAACACAAAACTCCAAGAGGATCAACTGTGGACCAGAAG GAGGCAATACCACCCTGCTCACTGAACCAAAGGCGCCTCCATGCCGAGATCTCGATGCCTGCTGA
AA sequence Show only first row Show all	>Lus10002721 pacid=23158701 polypeptide=Lus10002721 locus=Lus10002721.g ID=Lus10002721.BGIv1.0 annot-version=v1.0 MLGRLAATRLQEIHQAFRGAAQSSRLFSTALNYHIDSPDNQPDTPWEFNATNQEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIG VAPIRVYEVATFYSMFNRTPVGKYHLLVCGTTPCMIRGSREIEDALVKHLGVKRNEVTKDGLFSIGEMECMGSCVNAPMITVADYSNGSEGYSYNYYEDV SPKRVVEIVEMLRRGEKLPAGTQNSKRINCGPEGGNTTLLTEPKAPPCRDLDAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	0	1
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	1.0	0.8846
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	2.0	0.8767
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	2.4	0.8634
AT2G31440			unknown protein		Lus10027036 [exp]	2.4	0.8354
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030568 [exp]	3.5	0.8163
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	4.9	0.8532
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	5.0	0.8504
AT1G12230			Aldolase superfamily protein (...		Lus10032243 [exp]	6.8	0.7854
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10007215 [exp]	8.0	0.8222
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10013563 [exp]	8.1	0.8166

Compare expression of checked genes

Lus10002721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.