Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20010 57 / 2e-09 PTAC9, OSB2 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) AT5G44785 55 / 9e-09 OSB3 organellar single-stranded DNA binding protein 3 (.1.2) AT1G47720 49 / 6e-07 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) AT1G31010 49 / 9e-07 OSB4 organellar single-stranded DNA binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014728 [exp] 287 / 5e-98 AT1G47720 106 / 3e-27 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10018763 [exp] 209 / 5e-67 AT1G47720 109 / 3e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10024852 [exp] 198 / 6e-63 AT1G47720 110 / 2e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10032760 [exp] 59 / 3e-10 AT1G47720 74 / 2e-15 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10021767 [exp] 55 / 1e-08 AT1G47720 124 / 1e-31 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045100 [exp] 202 / 1e-64 AT1G47720 112 / 2e-29 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.005G218100 [exp] 186 / 3e-58 AT1G47720 114 / 6e-30 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.001G394200 [exp] 50 / 3e-07 AT4G20010 269 / 7e-88 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) Potri.014G035600 [exp] 49 / 7e-07 AT1G47720 158 / 6e-46 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00436 [flax] [poplar] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Lus10002722 pacid=23158714 polypeptide=Lus10002722 locus=Lus10002722.g ID=Lus10002722.BGIv1.0 annot-version=v1.0 ATGGCGTTGGAGCGGCTGGCGCTGTCGAGTAAACTCTATTTCTGCGTGCCGAGTAACCCTAAGGCGAGCGGAAGTTCGCCTGGTTCGTCGTTGTTAACTT CTAGCTGGTCAAGCTTCGAACCGCTGAGATTGAACCGCAGATTGAAGTGTTCGGCTGATTACAGAGACTACAACCAGAACAGTCAGACGGCAGTGGTTGG ATACGAAATACCAGCTGAGATTCCGTGGAAGAAGGAGCTCTGCAACTCGGTGCAGCTCATCGGAAATGTTGGAAGTCCGGTCGAGATTAAACACTTCCCT TCCGGGAAGGTCGTGGCGTGGACGAGTCTCGCGTTCAAGAAGTCCGCCACCGAATCTTGCTGGATCAATCTGACGTTCTGGAATGAAATGGCGGAAATCG CCTCTGAACATGTACAGAAAGGTAACCAGATTTATATGTCCGGTCGATTGATTGTGGACACCGTTGAGAATGAAGAAGGAAAGATCCAGACGTACTACAA GAGAAACCCAAAGTACCCAGATTTCAAGCACAAGGATACAGGAGAATCACTGTGGGTGGAAGGCAGGTATAATCCATCGTGGGTGAAGTCTCAGTTGTCG ATCTTGGATGAACGTATGGGATATGTTCAGGACGATCATGATACTCGCGGTGAAGATATCTGTCAAATGGGTACTGACGAATTCTTGTCATTCTAA
AA sequence Show only first row Show all	>Lus10002722 pacid=23158714 polypeptide=Lus10002722 locus=Lus10002722.g ID=Lus10002722.BGIv1.0 annot-version=v1.0 MALERLALSSKLYFCVPSNPKASGSSPGSSLLTSSWSSFEPLRLNRRLKCSADYRDYNQNSQTAVVGYEIPAEIPWKKELCNSVQLIGNVGSPVEIKHFP SGKVVAWTSLAFKKSATESCWINLTFWNEMAEIASEHVQKGNQIYMSGRLIVDTVENEEGKIQTYYKRNPKYPDFKHKDTGESLWVEGRYNPSWVKSQLS ILDERMGYVQDDHDTRGEDICQMGTDEFLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44785		OSB3	organellar single-stranded DNA...		Lus10002722 [exp]	0	1
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10018388 [exp]	3.9	0.8563
					Lus10039807 [exp]	4.0	0.8426
					Lus10040269 [exp]	4.2	0.8456
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10025231 [exp]	6.9	0.8250
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10016122 [exp]	7.4	0.8351
AT1G69710			Regulator of chromosome conden...		Lus10037192 [exp]	8.9	0.8489
AT2G21200			SAUR-like auxin-responsive pro...		Lus10008992 [exp]	11.8	0.8199
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008995 [exp]	14.3	0.8111
					Lus10023200 [exp]	16.9	0.7602
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10006411 [exp]	17.5	0.8156

Compare expression of checked genes

Lus10002722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.