Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04730 199 / 3e-63 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT3G23050 194 / 4e-61 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 189 / 2e-59 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT4G14550 189 / 3e-59 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT4G29080 153 / 1e-44 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT5G43700 145 / 7e-43 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT1G04240 145 / 8e-43 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT5G65670 147 / 8e-42 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT2G22670 145 / 2e-41 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT3G15540 132 / 1e-37 AUX_IAA MSG2, IAA19 MASSUGU 2, indole-3-acetic acid inducible 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014731 [exp] 425 / 2e-151 AT3G04730 241 / 4e-80 indoleacetic acid-induced protein 16 (.1) Lus10015907 [exp] 190 / 3e-59 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10024854 [exp] 182 / 3e-56 AT3G04730 221 / 3e-72 indoleacetic acid-induced protein 16 (.1) Lus10039414 [exp] 177 / 3e-54 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10028222 [exp] 165 / 3e-49 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10042929 [exp] 160 / 3e-46 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2) Lus10019241 [exp] 155 / 5e-45 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10039488 [exp] 149 / 5e-44 AT5G43700 247 / 3e-84 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Lus10014729 [exp] 149 / 6e-44 AT1G04240 230 / 2e-77 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G044900 [exp] 213 / 2e-68 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G053900 [exp] 210 / 3e-67 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.013G041400 [exp] 205 / 2e-65 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.008G161200 [exp] 191 / 5e-60 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 192 / 8e-60 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 187 / 1e-58 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.013G041300 [exp] 159 / 5e-48 AT5G43700 239 / 5e-81 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Potri.001G177400 [exp] 157 / 4e-47 AT3G04730 211 / 8e-69 indoleacetic acid-induced protein 16 (.1) Potri.008G161100 [exp] 154 / 8e-46 AT5G43700 238 / 3e-80 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) Potri.005G053800 [exp] 149 / 4e-44 AT5G43700 239 / 7e-81 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10002724 pacid=23158702 polypeptide=Lus10002724 locus=Lus10002724.g ID=Lus10002724.BGIv1.0 annot-version=v1.0 ATGGAAGTAGCGGTGAAGTCGGCGACGACGACGACGGAGATGATGATGGGTTTTGATGAGACTGAGCTCCGACTTGGCCTTCCGGGCAATAATAGTATTC TGAGGAAGAGAGGCTTCTCTGAAACGACGTCGGTGGATCTGCAGCTCAATCTTTCTTCTTCTCCGACCACCAAGGATGCGCCAGCTGTCAGTGACTGCAG CACTACCACTACTACTACTACTGCTGCTCCTAAAAGCCTTCATCTTGCTGATCCAGCCACCAAGCCTCCTCCTCCCAAGGCACAAGTAGTGGGATGGCCG CCAGTCCGATCTTTCAGGAAGAACATGATACAACCCACACCGCCACGTGCCCAGAAGAGCACCAGCCCCAATATTAAGGAGGAGGCGGTGGCAGAGAGCT GCGGCGCCGCCGAGCAGAAGGTGGCGGCGGGGAGCTTTGTGAAGGTGAGCATGGACGGAGCTCCTTACCTGAGGAAGGTGGATTTGAGCATGTACGGCAG CTACAGGGAGCTCTCCGATGCGCTGCTCAAAATGTTCGGCTCCTTCAACGGTGGTGGAGGAGAGCACTGCACCACCATGGATTTCATGAACGGAAGCAAG CTTGGCGAGAAAAATAATGAAGATATTTTCAACGGCGGCGATGATTGTGTTCCAACCTATGAGGACAAAGACGGCGACTGGATGCTCGTTGGCGATGTCC CTTGGGGGATGTTTGTGGAATCATGCAAACGGCTCCGCATCATGAAGGGCAAAGAGGCGATGGGTCTCGGCCATAACTACAGTCCCACCAAGAGCCATGG AGAAACGCAAGAACAGGATGTAGCTAGCCAGCTGGTTGGCGGTGACGGTACCGGCTGGCTGGAGGCGATGCAGAATCTGCTCCGTTGA
AA sequence Show only first row Show all	>Lus10002724 pacid=23158702 polypeptide=Lus10002724 locus=Lus10002724.g ID=Lus10002724.BGIv1.0 annot-version=v1.0 MEVAVKSATTTTEMMMGFDETELRLGLPGNNSILRKRGFSETTSVDLQLNLSSSPTTKDAPAVSDCSTTTTTTTAAPKSLHLADPATKPPPPKAQVVGWP PVRSFRKNMIQPTPPRAQKSTSPNIKEEAVAESCGAAEQKVAAGSFVKVSMDGAPYLRKVDLSMYGSYRELSDALLKMFGSFNGGGGEHCTTMDFMNGSK LGEKNNEDIFNGGDDCVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIMKGKEAMGLGHNYSPTKSHGETQEQDVASQLVGGDGTGWLEAMQNLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	0	1
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	2.4	0.8838
AT4G35320			unknown protein		Lus10001621 [exp]	3.5	0.8767
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	6.0	0.8707
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10026684 [exp]	7.2	0.8203
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	8.1	0.8545
AT3G49720			unknown protein		Lus10007228 [exp]	8.7	0.8714
AT2G36710			Pectin lyase-like superfamily ...		Lus10027737 [exp]	8.8	0.8319
AT3G07470			Protein of unknown function, D...		Lus10029538 [exp]	10.8	0.8349
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	11.1	0.8150
AT1G41830		SKS6	SKU5 SIMILAR 6, SKU5-similar 6...		Lus10025107 [exp]	12.2	0.8283

Compare expression of checked genes

Lus10002724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.