Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47960 334 / 2e-117 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT3G12160 333 / 5e-117 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G65270 295 / 4e-102 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 280 / 4e-96 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G16920 268 / 1e-91 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT1G07410 260 / 1e-88 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT4G18430 259 / 4e-88 AtRABA1e RAB GTPase homolog A1E (.1) AT5G60860 256 / 6e-87 AtRABA1f RAB GTPase homolog A1F (.1) AT1G09630 255 / 2e-86 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT2G33870 254 / 3e-86 ArRABA1h RAB GTPase homolog A1H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014732 [exp] 468 / 1e-170 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10016284 [exp] 316 / 3e-110 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10012032 [exp] 311 / 1e-108 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 311 / 5e-104 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 305 / 1e-103 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023153 [exp] 293 / 3e-101 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10000637 [exp] 293 / 4e-101 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10035924 [exp] 288 / 2e-99 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 288 / 3e-99 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G270100 [exp] 352 / 1e-124 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.016G050400 [exp] 319 / 1e-111 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.006G057700 [exp] 315 / 3e-110 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.005G073000 [exp] 303 / 4e-105 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.007G096000 [exp] 301 / 1e-104 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.011G070300 [exp] 263 / 2e-89 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.003G004100 [exp] 262 / 3e-89 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.010G197200 [exp] 262 / 4e-89 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.001G374000 [exp] 260 / 1e-88 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.006G000300 [exp] 260 / 1e-88 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10002725 pacid=23158713 polypeptide=Lus10002725 locus=Lus10002725.g ID=Lus10002725.BGIv1.0 annot-version=v1.0 ATGTCTAACTTGCACAGCAGTTACAATCAGAACATCGACTACGTGTTCAAGATCGTGCTAATCGGAGACTCTGCAGTCGGCAAGTCGCAGCTGCTCGCCA GATTCTCCAGGAACGAGTTCAATTTGGACTCCAAGTCCACAATTGGGGTTGAGTTCCAGACCAAAACCCTCATCATCGACCACAAAACCGTCAAGGCTCA AGTCTGGGACACCGCCGGCCAAGAACGGTACCGGGCAGTGACAAGCGCATACTACAGAGGGTCACTAGGGGCTCTGTTGGTGTATGACATAACAAAGCGA GAATCTTTCGAACATATGAAGAGGTGGCTAACTGAACTAAGGGAGCATGCTGATGAGAACATTGTGATCATGCTCATTGGTAACAAATCCGATTTGGGGA CTCAGCGAGCTATCCCATCTGAGGAGGCCAAAGAGTTTGCTGTATCCCAAAACCTCCTGTTTATGGAGACATCAGCACTTCAATCGACTAATGTGGAACC GGCTTTCGTCTCTGTCTTGACAGAGATCTATCGAATCGTCAGTAAGAAGACTCTTCTCCCCAATGACCAGGAACACGAATCTAAGGGGAGCGCGACGCTT CTCAAGGGAACTGCTCTTGCTGTCAATAATAGCGAGTCACAACTTGCTCAGGGAGGAACAAGTACTTACAGCTGTTGCAGAACCATGTAA
AA sequence Show only first row Show all	>Lus10002725 pacid=23158713 polypeptide=Lus10002725 locus=Lus10002725.g ID=Lus10002725.BGIv1.0 annot-version=v1.0 MSNLHSSYNQNIDYVFKIVLIGDSAVGKSQLLARFSRNEFNLDSKSTIGVEFQTKTLIIDHKTVKAQVWDTAGQERYRAVTSAYYRGSLGALLVYDITKR ESFEHMKRWLTELREHADENIVIMLIGNKSDLGTQRAIPSEEAKEFAVSQNLLFMETSALQSTNVEPAFVSVLTEIYRIVSKKTLLPNDQEHESKGSATL LKGTALAVNNSESQLAQGGTSTYSCCRTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10002725 [exp]	0	1
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	1.0	0.8861
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018287 [exp]	5.8	0.8394
AT5G50460			secE/sec61-gamma protein trans...		Lus10012539 [exp]	7.2	0.7984
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10014732 [exp]	8.1	0.7998
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	10.2	0.8366
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	13.4	0.7988
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10022525 [exp]	13.6	0.8240
AT3G51580			unknown protein		Lus10025224 [exp]	14.1	0.7870
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Lus10001354 [exp]	14.4	0.7955
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	17.5	0.7811

Compare expression of checked genes

Lus10002725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.