Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24990 681 / 0 Serine/threonine-protein kinase Rio1 (.1) AT5G37350 679 / 0 Serine/threonine-protein kinase Rio1 (.1.2) AT2G23090 55 / 1e-09 Uncharacterised protein family SERF (.1) AT3G51270 56 / 6e-08 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017927 [exp] 926 / 0 AT2G24990 677 / 0.0 Serine/threonine-protein kinase Rio1 (.1) Lus10032627 [exp] 702 / 0 AT2G24990 531 / 0.0 Serine/threonine-protein kinase Rio1 (.1) Lus10014734 [exp] 79 / 3e-17 AT2G23090 54 / 1e-10 Uncharacterised protein family SERF (.1) Lus10019287 [exp] 57 / 5e-10 AT2G23090 134 / 5e-43 Uncharacterised protein family SERF (.1) Lus10011535 [exp] 57 / 5e-10 AT2G23090 132 / 2e-42 Uncharacterised protein family SERF (.1) Lus10017941 [exp] 57 / 3e-08 AT3G51270 580 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2) Lus10013682 [exp] 55 / 2e-07 AT3G51270 585 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G096100 [exp] 772 / 0 AT5G37350 701 / 0.0 Serine/threonine-protein kinase Rio1 (.1.2) Potri.001G296600 [exp] 65 / 6e-13 AT2G23090 129 / 5e-41 Uncharacterised protein family SERF (.1) Potri.014G018400 [exp] 61 / 6e-12 AT2G23090 62 / 1e-14 Uncharacterised protein family SERF (.1) Potri.014G018100 [exp] 62 / 7e-12 AT2G23090 139 / 5e-45 Uncharacterised protein family SERF (.1) Potri.002G120100 [exp] 61 / 1e-11 AT2G23090 141 / 7e-46 Uncharacterised protein family SERF (.1) Potri.017G001100 [exp] 57 / 3e-08 AT3G51270 538 / 0.0 protein serine/threonine kinases;ATP binding;catalytics (.1.2) Potri.009G090800 [exp] 51 / 4e-08 AT2G23090 118 / 7e-37 Uncharacterised protein family SERF (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01163 [flax] [poplar] RIO1 RIO1 family
Representative CDS sequence Show only first row Show all	>Lus10002728 pacid=23158705 polypeptide=Lus10002728 locus=Lus10002728.g ID=Lus10002728.BGIv1.0 annot-version=v1.0 ATGTCTGCGGAGGTTGAAAATTCTGTGCCGGTCGAACAGCTCGCTGGAGAAGAAGATGATGAAGTTTTGTGGTCTTCCGACTCTGAAATCGGTGATGCAT TGGATTGGTTGGATGCCAAAGACCACGGTGAAGCGGGCGAGGGGAGTTTCGCAACCAATTCAAGGAGGCCGAACGCTCATGGAGGCCTCCACTCTCGGCC TAGTTCTTCGACCCTTCAACCTCTTGCCAATCGTAACCAGAAGTTCACCCACCACATTCGAGCTTCTCCACTAGAGGAGTGGGAAGGGAGGATGAACGTT GGGATGTCTAATTCTGTGACTACTGCAATTCGTGGAAGTGTTCGGGACATTGCAATCGGAAAAACTAAAACTACTGAGAAAGCAGACCGCGCTACTGTTG AGCAGGCCATTGATCCTAGGACCCGAATGGTTTTGTTCAAAATGCTTAATCGTGGGGTGTTTAATGATATTAATGGCTGCATTTCAACCGGAAAAGAGGC AAATGTCTACCATGCAACTAAATCCAATGGTCAGGAGCTTGCAATCAAAGTGTACAAAACATCCGTTTTGGTCTTCAAGGATCGGGACAGATATGTAAAA GGTGACTATCGATTTAGATTTGGATACTGCAAACATAATCCCAGGAAAATGGTGAAGACATGGGCTGAGAAGGAATTGAGGAACCTTCTAAGGATAAAAG CTGCTGGAATTAGGTGTCCAACTCCTTCTCTGTTGAGGCTTCATGTCCTGGTGATGGAATTCATAGGGAAAGCTGGATGGGCAGCACCGCGTCTGAAGGA TGCTGGCTTATCATTGGACAAGTTGCGGGAGGGTTATATGGAGATGATCATGTACATGCGTATATTGTATCAAAAGTGCAAACTTGTACACGGCGACCTC AGTGAGTACAACATACTTTATTTCGAGGGTCATCTGTATATAATTGATGTATCTCAGTCAGTTGATCTAGACCATCCTCGGGCCCTTGATTTCTTGCGTG AGGATTGTGTGCATGTTTCTGACTTCTTTAGGAAGCATGGGGTGGCTGTGATGAATATTAGGGAGTTGTTTGACTTTATAGTGGATCCAAATATTAAGGA TGACTCCATTGACAGCTACTTGGAAGAGGTTCAAAAAACAATAATGAGCAGAGATGTTACTGCAGAAGATGAAATTGCAGATTCAGTGTTTGTTCAGGCA TACATTCCAAAAACACTAGAGAGGGTGAAGCATGCGGAAGAGGATGTCATACGGCTGACTAGTGGGGAGAACACTGAGGACATGTACTACAAGACAATCA CAGGATTGAAGGGCGTTCTTTCGAAAGCCGCAGACCAGAAAAATGATGAGCATAAGGAGGAGGAAGGGAAGCCTGGAGAAGAGTCGTTAGTGAACGAGCA GGATGCCAGTTGCGACTCTGACGAGGACAGTGGGTTGAGTGATTCAGATGATGATGGAAGCAGTTGTGTGTCGGAAGAGGAGAAACAGAGTCAAGATGAT AGAAAAGCTGCGAGGAAAGAGAACAAGAAGAAAGTGAAAGAAGAGAAGAGGGAAGCTCGGAAGAGTAAAGTCCCCAAGGCTATAAAGAAAAGGAAGAAGA AAATGTCCAAAGCAAAGAAGACAAGACCGTTAGATCAGTCAAAGGGCCAAACCCTTGACGGGGTGGAATATAGTGCACTCGCCATTGCTGCCGCAGAAAG GCTTCCTCTAGCTTCTAATAAGGGAAGTAATAACCTCACCCACCGTTCTTCCTCCTCCTTCTCTGGTATTCGCAACCACAACAAAAAGGCGGAATTCGAG CTTATTGAAGTCGATCGATCGCATTCCGCCATGGGAGGAGGTAACGGACAGAAATCGAAGACGGCTCGTGAGAGGAATATGGAAAAGCAAAAAGCTGCCC GAGGTAGCCAGCTCGAAACCAACAAGAAGGCCATGAATATTCAGGTAGTTTCGTAG
AA sequence Show only first row Show all	>Lus10002728 pacid=23158705 polypeptide=Lus10002728 locus=Lus10002728.g ID=Lus10002728.BGIv1.0 annot-version=v1.0 MSAEVENSVPVEQLAGEEDDEVLWSSDSEIGDALDWLDAKDHGEAGEGSFATNSRRPNAHGGLHSRPSSSTLQPLANRNQKFTHHIRASPLEEWEGRMNV GMSNSVTTAIRGSVRDIAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFNDINGCISTGKEANVYHATKSNGQELAIKVYKTSVLVFKDRDRYVK GDYRFRFGYCKHNPRKMVKTWAEKELRNLLRIKAAGIRCPTPSLLRLHVLVMEFIGKAGWAAPRLKDAGLSLDKLREGYMEMIMYMRILYQKCKLVHGDL SEYNILYFEGHLYIIDVSQSVDLDHPRALDFLREDCVHVSDFFRKHGVAVMNIRELFDFIVDPNIKDDSIDSYLEEVQKTIMSRDVTAEDEIADSVFVQA YIPKTLERVKHAEEDVIRLTSGENTEDMYYKTITGLKGVLSKAADQKNDEHKEEEGKPGEESLVNEQDASCDSDEDSGLSDSDDDGSSCVSEEEKQSQDD RKAARKENKKKVKEEKREARKSKVPKAIKKRKKKMSKAKKTRPLDQSKGQTLDGVEYSALAIAAAERLPLASNKGSNNLTHRSSSSFSGIRNHNKKAEFE LIEVDRSHSAMGGGNGQKSKTARERNMEKQKAARGSQLETNKKAMNIQVVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24990			Serine/threonine-protein kinas...		Lus10002728 [exp]	0	1
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10029026 [exp]	3.0	0.9329
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10022057 [exp]	4.5	0.9408
AT4G14320			Zinc-binding ribosomal protein...		Lus10038130 [exp]	6.0	0.9405
AT1G25260			Ribosomal protein L10 family p...		Lus10043280 [exp]	6.9	0.9235
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	8.1	0.9261
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10011145 [exp]	8.9	0.8892
AT3G49100			Signal recognition particle, S...		Lus10018775 [exp]	13.2	0.8996
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10003379 [exp]	13.9	0.9210
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	13.9	0.9130
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10003844 [exp]	14.1	0.9295

Compare expression of checked genes

Lus10002728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.