Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014735 [exp] 258 / 6e-90 ND / Lus10014737 [exp] 249 / 2e-86 ND / Lus10037862 [exp] 129 / 6e-39 ND / Lus10030380 [exp] 117 / 4e-34 ND / Lus10037860 [exp] 118 / 6e-34 ND / Lus10037861 [exp] 116 / 1e-33 ND / Lus10002152 [exp] 114 / 4e-33 ND / Lus10028948 [exp] 114 / 5e-33 ND / Lus10029851 [exp] 107 / 1e-29 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082700 [exp] 111 / 2e-31 ND / Potri.014G081800 [exp] 111 / 2e-31 ND / Potri.014G082000 [exp] 109 / 9e-31 ND / Potri.002G158600 [exp] 107 / 5e-30 ND / Potri.002G158700 [exp] 106 / 1e-29 ND / Potri.019G100100 [exp] 103 / 1e-28 ND / Potri.003G126200 [exp] 102 / 4e-28 ND / Potri.014G081900 [exp] 100 / 5e-27 ND / Potri.017G153100 [exp] 100 / 5e-27 ND / Potri.009G009700 [exp] 95 / 6e-25 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002730 pacid=23158712 polypeptide=Lus10002730 locus=Lus10002730.g ID=Lus10002730.BGIv1.0 annot-version=v1.0 ATGAACATCATCATTAGTGTTTCCCTACTACTACTCTTCCTCCCCTTCCTCATTCCTACAGAAGCTGGTCGAGTCGTTGGAGGGACAACATCATTGGTCC CTTCGAACGCGACCAGCAAGATCCAAGACGAGGTTTACCGTGCGACGATGACCATCAACGGCTTCCAAAAGGGCCAGGACGGAGGAGGGCCCTCAGAATG CGACGGAAAGTACCACAGCAACAACCAGAAGATAGTGGCGCTGTCTACCCACTGGTACCATGGTAGGTGCAACGACTGCATCAAAATTAAGTGGAGAGGG AAGACCACTACGGCTAAGGTTGTGGACGAGTGCGATACGTCGAGGGGATGCAAGCAGAACATCGTCGATGCGTCGAAGGCTGTGTGGACGAGTCTTGGTG TGAAGAAGGGGAGCAGTGAGTTTGGCGAGACTAGTGTCACATGGGAGGAATGCTAG
AA sequence Show only first row Show all	>Lus10002730 pacid=23158712 polypeptide=Lus10002730 locus=Lus10002730.g ID=Lus10002730.BGIv1.0 annot-version=v1.0 MNIIISVSLLLLFLPFLIPTEAGRVVGGTTSLVPSNATSKIQDEVYRATMTINGFQKGQDGGGPSECDGKYHSNNQKIVALSTHWYHGRCNDCIKIKWRG KTTTAKVVDECDTSRGCKQNIVDASKAVWTSLGVKKGSSEFGETSVTWEEC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10002730 [exp]	0	1
AT2G17660			RPM1-interacting protein 4 (RI...		Lus10025949 [exp]	48.7	0.6688
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10019789 [exp]	52.3	0.6569
					Lus10024633 [exp]	171.7	0.6248
AT5G05370			Cytochrome b-c1 complex, subun...		Lus10021674 [exp]	219.5	0.5982

Compare expression of checked genes

Lus10002730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.