Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44110 285 / 3e-94 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 275 / 3e-90 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G47940 91 / 2e-20 DNAJ heat shock family protein (.1) AT2G20560 88 / 1e-19 DNAJ heat shock family protein (.1) AT2G20550 87 / 1e-19 HSP40/DnaJ peptide-binding protein (.1.2) AT1G59725 87 / 2e-19 DNAJ heat shock family protein (.1) AT4G28480 84 / 1e-18 DNAJ heat shock family protein (.1.2) AT1G10350 84 / 2e-18 DNAJ heat shock family protein (.1) AT2G22360 84 / 4e-18 DNAJ heat shock family protein (.1) AT5G01390 82 / 5e-18 DNAJ heat shock family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008652 [exp] 504 / 0 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 437 / 1e-155 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2) Lus10004109 [exp] 280 / 1e-92 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 222 / 1e-69 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10042891 [exp] 213 / 4e-66 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10030803 [exp] 87 / 3e-19 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10000631 [exp] 87 / 6e-19 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10013280 [exp] 86 / 9e-19 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10013981 [exp] 86 / 1e-18 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G018800 [exp] 304 / 1e-101 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 298 / 3e-99 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 284 / 8e-94 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 227 / 1e-71 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.014G055300 [exp] 171 / 3e-51 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2) Potri.008G194000 [exp] 94 / 4e-22 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 91 / 1e-20 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 90 / 3e-20 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 88 / 2e-19 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 87 / 2e-19 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002733 pacid=23162044 polypeptide=Lus10002733 locus=Lus10002733.g ID=Lus10002733.BGIv1.0 annot-version=v1.0 ATGTTTGGGAGAGCTCCGAAGAAAAGCGACAATACCAAATACTATGAGATCCTTGGGGTTTCCCAGAGCGCATCGCAGGATGATCTGAAGAAGGCTTATC GCAAAGCAGCCATCAAGAATCATCCCGATAAGGGTGGTGACCCCGAGAAGTTCAAAGAGTTGGCACAAGCTTATGAAGTTCTTAGTGACCCAGAGAAAAG GGAGATATATGATCAGTATGGAGAGGATGCCCTCAAGGAAGGAATGGGAGGAGGCGGTGGCGGCCACGATCCATTTGACATCTTCCAGTCATTCTTTGGC GGTGGGGGCGGTAATCCTTTTGGTGCTGGTGGGAGCAGTAGGGGCCGAAGGCAGAGGAGGGGTGAAGATGTCGTCCATCCTCTCAAGCCCGACACGGTCA CAGGAGACATTGTTTTCGTGCTACAACAGAAGGAACATCCTAAGTTCAAGCGAAAGGGGGATGATCTGTTTGTTGAGCACACCCTATCTCTTACAGAGGC TCTATGTGGCTTCCAGTTTGCATTGACTCATTTGGATGGACGACAGCTCCTAATAAAATCCCAACCCGGGGAAGTAGTCAAACCTGATCAATTCAAGGCA ATAAACGACGAAGGGATGCCAATGTACCAGCGTCCCTTCATGAGAGGCAAGATGTACATCCATTTTGGCGTTGATTTTCCGGACTCTCTTTCTCCTGACC AGAGCAAAGCCCTGGAGGGTGTCCTTCCCGCAAGGTCATCGGTTCAGCTCTCGGACATGGAGCTGGACGAGTGCGAGGAGACAACACTGCATGATGTGAA CATTGAAGATGAAATGAGGCGGAAGCAACAGGCAGCCCAGGAGGCCTACGATGAAGATGATGAGGATATGCATGGAGGAGCGCAGAGGGTGCAATGTGCC CAGCAATAA
AA sequence Show only first row Show all	>Lus10002733 pacid=23162044 polypeptide=Lus10002733 locus=Lus10002733.g ID=Lus10002733.BGIv1.0 annot-version=v1.0 MFGRAPKKSDNTKYYEILGVSQSASQDDLKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFG GGGGNPFGAGGSSRGRRQRRGEDVVHPLKPDTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFALTHLDGRQLLIKSQPGEVVKPDQFKA INDEGMPMYQRPFMRGKMYIHFGVDFPDSLSPDQSKALEGVLPARSSVQLSDMELDECEETTLHDVNIEDEMRRKQQAAQEAYDEDDEDMHGGAQRVQCA QQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	0	1
AT3G58030			RING/U-box superfamily protein...		Lus10021063 [exp]	3.5	0.8803
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10039595 [exp]	3.7	0.8945
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10029631 [exp]	4.8	0.8595
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	4.9	0.8862
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	5.0	0.8858
AT4G10790			UBX domain-containing protein ...		Lus10017317 [exp]	5.1	0.8879
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	8.5	0.8642
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10027641 [exp]	10.4	0.8393
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10040239 [exp]	13.2	0.8788
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	13.3	0.8862

Compare expression of checked genes

Lus10002733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.