Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07960 969 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 914 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 899 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G21980 712 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 707 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G26420 650 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G10900 490 / 3e-163 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 397 / 1e-126 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 374 / 2e-118 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G01460 245 / 1e-73 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008651 [exp] 1419 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 1100 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10024151 [exp] 1093 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10010458 [exp] 901 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10029661 [exp] 697 / 0 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10039011 [exp] 675 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10027306 [exp] 671 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 666 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10018200 [exp] 522 / 4e-175 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196000 [exp] 1001 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 997 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 939 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.002G088100 [exp] 709 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 704 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 509 / 1e-170 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 500 / 2e-167 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.006G121200 [exp] 416 / 9e-134 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 385 / 2e-122 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 358 / 4e-112 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10002734 pacid=23162039 polypeptide=Lus10002734 locus=Lus10002734.g ID=Lus10002734.BGIv1.0 annot-version=v1.0 ATGAGCAAAGAGTACAAAGGCATTGTGAAGGCCTGGGAAGCGACGGTAAGGAAATCACAAGGTCACACGAAGAAACGATCACACAGCATCTTCGGCACGA TGATGATGTCAGCTGCCTCTGTGGCGCACGCGGACGACGAAGATGAACCTTCGACTGCAACACAACAGCAGCATCATAAAGAGGTTGTGCTCCCCAATGG AGACTTCTACACGGGGCAATGGCTGGAAGGGTTCCCACATGGCCACGGGAAGTATCAATGGGGTGGTGATGGGTGTATGCATGTTGGGGAATGGCAAAGG GGGATGACGACTGGGAAAGGAAGGTTCTCTTGGCCGTCTGGTGCTACTTATGAAGGGGATTTCAAAGCAGGGTACATGGATGGCAAAGGAACTTACACAT CTTCCTCTGGGGACACTTATAAAGGCTGCTGGGTTATGAATTTGAAGCATGGCCAAGGAGTTGAAAGCTTTGTTGATGGGGATTGTTATGATGGCGAGTG GAAGAAGGGTTTGCAAGATGGGGAAGGGAAGTACCAATGGAAGAAGAATGGGAGTAGCTATGTTGGTTCATGGAAAAATGGGGTTATGAATGGGAGTGGG GTTATGACTTTTGGGAATGGGAATGTTTATAATGGGAGTTGGGAAGATGGGTTTCCTAAAGGGGAAGGGACTCTAACATTTGCTGATTACGGTGGTTCCC ATGTTGGTGTGTGGAGCAAAGATGATGTTGGCAGTAGTGATCATCATCAGGAGTTGTTCAATACGGATTTGGTGGGATGTGTGGTTTGTGTAAGTGACGC TGTGCCGATATATCCGTCCCAGAAGTCTTGTTACGTGCCCGGTGGTTTGGATCCGGGGGTTTTTGGGAACCCTGTGGATGGGAGGTTGAGTAATTACAGT ATGAGTTCTTGGGATGGGAGTGATTCTGGTGTTAGTGGGTTTGATGGGGATGGGGAGGAAGGTGTTGCATTGAATGATAACTTGAAGAAGTTGAGGTTAC AGCCTGCCAAGAAGCAAGGAGTGACTATTTCGAAAGGGCATAAGAACTATGAGCTCATGCTCAATCTCCAGCTAGGAATCAGACATTCGGTAGGGCGGCC AGGTCCTCAGGTATCTCTTGATCTAAAGTCTTCAGCTTTTGACCCGAGGGAGAAAGTATGGACTAAATTCCCACCTGAAGGATCAAAGCATACTCCGCCT CACCAGTCTTGTGACTTCAGATGGAAGGACTACTGCCCTTTAGTTTTCAGGACTCTTAGGAAATTGTTCAATGTTGATGCAGCTGATTACATGTTGTCAA TATGTGGGAACGACGCGCTTCGGGAGCTGTCTTCTCCTGGAAAGAGCGGGAGCTTCTTTTATTTGACTAATGACGATCGTTACATGATTAAGACTATGAA GAAGGCTGAAGCAAAAGTACTCATCAGGATGTTGCCAGCATACTATAATCATGTTCGGAAATTCGAGAACACTCTAGTCACGAAATATTATGGACTACAT TGCGTGAAACTACCAGGGCCTAATCAAAAGAAGGTGCGCTTCATTATAATCGGAAATCTGTTCAACACCGAGTATGCGATTCATAGGCGCTTCGACTTGA AAGGTTCTTCCCATGGTCGTATCACATGTAAACCCGAGTCCGAAATCGATGCCTCAACAACACTCAAGGATCTTGACCTCAACTTTCTATTCCGGTTGCA GAGAGCTTGGTATCAAGAGTTCTGCAGGCAAATAGAGAGAGACTGCGAACTTCTTGAGCAAGAGAGGGTTATGGATTACAGTCTTTTAGTTGGCATTCAC TTCCGAGGGACTTCGCATAGAGATGCCTTGACACCTCCTAGAACATCTGGAGTTCGTACCCCGACTGGCGTTCGTACTCCAACACGGAATGGAGATGCTG ACAGTAATACTGGAGCTCCTAGACTTTCTAGAGCAGACATGGATCAGCTTGTTCTTGATCCTTCCCGGTGGCCTTCCATCAAACTAGGGATGAACATGCC AGCAAGAGCGGAGAAGACGAAAAGGAACGAACTGCAGCTGGTCGGAGAACCAACCGGCGAACTCTATGAGGTGATCCTGACGTTCGGCATCATAGACGTA CTACAAGACTACGACATCAGCAAAAAGCTCGAGCATGCATACAAATCAATGCAATACGACCCGACCTCTATCTCAGCTGTCGATCCGAAGCAGTATTCGA GGCGGTTCAGGGACTTCATCTTCAAAGTCTTCGTCGAGGAAAGCTGA
AA sequence Show only first row Show all	>Lus10002734 pacid=23162039 polypeptide=Lus10002734 locus=Lus10002734.g ID=Lus10002734.BGIv1.0 annot-version=v1.0 MSKEYKGIVKAWEATVRKSQGHTKKRSHSIFGTMMMSAASVAHADDEDEPSTATQQQHHKEVVLPNGDFYTGQWLEGFPHGHGKYQWGGDGCMHVGEWQR GMTTGKGRFSWPSGATYEGDFKAGYMDGKGTYTSSSGDTYKGCWVMNLKHGQGVESFVDGDCYDGEWKKGLQDGEGKYQWKKNGSSYVGSWKNGVMNGSG VMTFGNGNVYNGSWEDGFPKGEGTLTFADYGGSHVGVWSKDDVGSSDHHQELFNTDLVGCVVCVSDAVPIYPSQKSCYVPGGLDPGVFGNPVDGRLSNYS MSSWDGSDSGVSGFDGDGEEGVALNDNLKKLRLQPAKKQGVTISKGHKNYELMLNLQLGIRHSVGRPGPQVSLDLKSSAFDPREKVWTKFPPEGSKHTPP HQSCDFRWKDYCPLVFRTLRKLFNVDAADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTMKKAEAKVLIRMLPAYYNHVRKFENTLVTKYYGLH CVKLPGPNQKKVRFIIIGNLFNTEYAIHRRFDLKGSSHGRITCKPESEIDASTTLKDLDLNFLFRLQRAWYQEFCRQIERDCELLEQERVMDYSLLVGIH FRGTSHRDALTPPRTSGVRTPTGVRTPTRNGDADSNTGAPRLSRADMDQLVLDPSRWPSIKLGMNMPARAEKTKRNELQLVGEPTGELYEVILTFGIIDV LQDYDISKKLEHAYKSMQYDPTSISAVDPKQYSRRFRDFIFKVFVEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10002734 [exp]	0	1
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	15.8	0.8409
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10036716 [exp]	17.0	0.7638
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10038004 [exp]	20.1	0.8343
AT1G75800			Pathogenesis-related thaumatin...		Lus10034534 [exp]	25.8	0.8224
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	48.7	0.7936
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	57.5	0.8161
AT1G15860			Domain of unknown function (DU...		Lus10040019 [exp]	60.1	0.7457
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10022905 [exp]	65.7	0.7733
AT4G11030			AMP-dependent synthetase and l...		Lus10001830 [exp]	72.4	0.8085
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10015928 [exp]	73.1	0.8118

Compare expression of checked genes

Lus10002734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.