Plant FIBer expression Database

Lus10002735 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025503
[exp]
141 / 4e-36 ND /
Lus10031082
[exp]
135 / 3e-34 ND /
Lus10024934
[exp]
126 / 7e-31 ND /
Lus10020249
[exp]
120 / 5e-29 ND /
Lus10026716
[exp]
107 / 1e-25 ND /
Lus10016109
[exp]
104 / 1e-23 ND /
Lus10020808
[exp]
81 / 5e-16 ND /
Lus10004033
[exp]
65 / 4e-12 ND /
Lus10035468
[exp]
57 / 2e-09 ND /
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0345 Aerolisin_ETX PF01117 Aerolysin Aerolysin toxin
Representative CDS sequence
>Lus10002735 pacid=23162061 polypeptide=Lus10002735 locus=Lus10002735.g ID=Lus10002735.BGIv1.0 annot-version=v1.0
ATGTCATCAAAGCCGATACTGGCATTGCCAAGATTTGTAGTGCTAAAATCCGAAAAAAGCAAGAAATACGTGCAGTACGTGGATCCTGACCCAGTTGAGG
ATTTATACCTGAAACAGCGCGGGTGCGGCCTTCTCAGAGCCGACGGGGAAGATGTTCTAAGCAGTTACGCCAAGTTCGAACTTGAGGCGTTTAACGACAG
CACCAAAGGGAAGTCCTACTTCCGACTCAGGTCCTGCTACAACAACAAATACGTGGTGGCATATCAAAAGGACCCTCGCCGCGGTAAGATGACCTTCGTA
GCGGGAGGAACCGGTGGTCCCGTCGAGGAGCTGTCGTTGACGTCGACATTGCCCACAAAGGAGTCGACGTCGATGAAGACCGACCCAGCAAAGGCACCCG
AAGGAGTGCTGGAGACGGGGATTGATTCTGCCCGACGTAGAACTTTCGGTTACTCACTCTTCGAATATGAGATTAGGTTCCTTTTCGGGCCGAGTAAGAA
TTTAGTAATCAATATGATAGACACGCACAACGACTGTGTCCCTATATTAGCTGATGATGGCAGCGGTGATATACTCGCCCACGGGCCCGCTAGATCGCCT
TTTATGGGCACACATCCAGTACGATTTCCATTTCAGGAACTTATCGAGGTAATCGATTGGGAGACCCTGATGCCATTTCCTAAGCACGTAGCATTCAAAG
GTGACAACGGCAAGTACCTTGTCGTTCGCGATGGAGAGCTCGAGTTCTCAGGTGAAGACCGAACCGACGAAGCTGTGGTGCAGGAGGTGGTTAGCCTTGG
AGATGGAACTATCCGCATAAAATCCATACAAATGGATAAGTTCTGGGACCACGTCGACGGGGACAATCGTTTGATTCAACCTCAACACTTACATCCCGAA
AACGAAGAAAATACTACTAGTCACGAAAGTGAGATATTTATTCCAGTGAAATTGACAGACAATCTCATTGCGCTGCGCAAAAAAGTTGGCCACGACTACT
TCTTCTGTAAACGTCTGGACAAGGAACAAGACCGCCTAGGTGCGACCACCACGAGGATCGACAGGTACGCTCGCCTCACTGTGGAGGAAGTGGTTCTAAC
GAAGAGCTTCTACGATGTGGAATACAGGCTGGACCACGTCAGGGTCTACAACGAGTCCACGGTCTCCCTGGCAACCCAAGTGGCTGCCAACAAGACCAAC
GAACCGCAGACTACTAAGCTGGCCTTGGAATACACCTTGTCGAGGACCAGCAACTGGAGCACGACAACCGGTTGGAACGCTGGCGTATCCGTTTCTGCTT
CCTCCAGCTTTAAGATTCCCTGGATTGGGGAAACCACTTTCGAGGTTACGGGCTCCTACGAGCATTCGAGCGAGGACATGAAAGGAGGCGGGGACCAAAA
CGACACGAAGATACAGACGGAGTTCCAGCTCACGGTTCCTCCAAACACGTCGACTAAAGTCAGCTTGATGGCCACCAAAGGCTCTTATGACATCCCTTTC
CACTATACCAACAGGGACACCATTCCCGATGGCTCCGTCGTTATCAACCGAAATAACGACGGGGTGTTCACCGGGACCGATTGCTATAACTTCAGGTTTG
ACATTACCGAGTACCCACTTGATGACCCCAACAAACCTTCTACTCCCGCTGCTGCTACTCCCGCAGCCGCAACAAAGTGA
AA sequence
>Lus10002735 pacid=23162061 polypeptide=Lus10002735 locus=Lus10002735.g ID=Lus10002735.BGIv1.0 annot-version=v1.0
MSSKPILALPRFVVLKSEKSKKYVQYVDPDPVEDLYLKQRGCGLLRADGEDVLSSYAKFELEAFNDSTKGKSYFRLRSCYNNKYVVAYQKDPRRGKMTFV
AGGTGGPVEELSLTSTLPTKESTSMKTDPAKAPEGVLETGIDSARRRTFGYSLFEYEIRFLFGPSKNLVINMIDTHNDCVPILADDGSGDILAHGPARSP
FMGTHPVRFPFQELIEVIDWETLMPFPKHVAFKGDNGKYLVVRDGELEFSGEDRTDEAVVQEVVSLGDGTIRIKSIQMDKFWDHVDGDNRLIQPQHLHPE
NEENTTSHESEIFIPVKLTDNLIALRKKVGHDYFFCKRLDKEQDRLGATTTRIDRYARLTVEEVVLTKSFYDVEYRLDHVRVYNESTVSLATQVAANKTN
EPQTTKLALEYTLSRTSNWSTTTGWNAGVSVSASSSFKIPWIGETTFEVTGSYEHSSEDMKGGGDQNDTKIQTEFQLTVPPNTSTKVSLMATKGSYDIPF
HYTNRDTIPDGSVVINRNNDGVFTGTDCYNFRFDITEYPLDDPNKPSTPAAATPAAATK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10002735
[exp]
0 1
AT1G80600 WIN1 HOPW1-1-interacting 1 (.1) Lus10031775
[exp]
7.9 0.7556
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Lus10036114
[exp]
10.8 0.7606
AT5G03170 ATFLA11, FLA11,... ARABIDOPSIS FASCICLIN-LIKE ARA... Lus10002986
[exp]
13.4 0.7519
AT3G26000 Ribonuclease inhibitor (.1) Lus10011378
[exp]
13.5 0.7125
AT5G23040 CDF1 CELL GROWTH DEFECT FACTOR 1, P... Lus10000868
[exp]
17.1 0.7551
AT3G09590 CAP (Cysteine-rich secretory p... Lus10009068
[exp]
18.8 0.7077
AT1G65730 YSL7 YELLOW STRIPE like 7 (.1) Lus10013323
[exp]
25.3 0.6956
AT1G67540 unknown protein Lus10037003
[exp]
26.3 0.7385
AT2G30130 AS2 PCK1, LBD12, AS... PEACOCK 1, Lateral organ bound... Lus10017431
[exp]
32.4 0.7217
AT4G37650 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM... Lus10025200
[exp]
33.3 0.7321

Lus10002735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.