Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 145 / 1e-36 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G14470 91 / 5e-19 NB-ARC domain-containing disease resistance protein (.1) AT1G69550 64 / 1e-10 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16920 58 / 1e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16950 58 / 1e-08 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G33300 54 / 1e-07 ADR1-L1 ADR1-like 1 (.1.2) AT5G45230 54 / 2e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44670 54 / 2e-07 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G40060 54 / 3e-07 Disease resistance protein (NBS-LRR class) family (.1) AT1G58807 53 / 4e-07 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016316 [exp] 947 / 0 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 719 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 366 / 1e-113 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 310 / 1e-93 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039548 [exp] 204 / 2e-60 AT3G14460 164 / 6e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 204 / 3e-56 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 168 / 3e-44 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 160 / 1e-41 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 156 / 3e-40 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029300 [exp] 351 / 1e-108 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 315 / 5e-95 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 315 / 6e-95 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 315 / 7e-95 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 305 / 2e-91 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 288 / 6e-86 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 288 / 2e-85 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 284 / 3e-84 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 283 / 1e-83 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 281 / 3e-83 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002737 pacid=23162051 polypeptide=Lus10002737 locus=Lus10002737.g ID=Lus10002737.BGIv1.0 annot-version=v1.0 ATGGAACTCTCTGGGTGTAAGAACTGCTACTGCTTGCCCCCACTTGGACAGTTGGTGTCTCTAGAAAAGCTATCTATCAAAGCATTTGACAATATTCGAA CTGTGGGTGTGGAGTTTTGTGGGAGTGCGACATCCACGGAGAAGGCATTTAGATCTCTCAAAACGTTGGAGTTCGAAAACATGTCAGAATGGGAGGAATG GACTTCTGTGGTAGAAAATGACGGTGGAAATTACCCTCTTCTCGTGGAGCTTTACTTGACTGATTGTCCCAAACTGAAGCAAACGCTACCAAGCAACCTT CCTTCCTTAAAAACACTTCGGTTAATGGGATGCCAGCGTCTTCGAGTTGCGTCACTTCCAAGTAATTCTGTAGCTTTTAAAATGGAAGTGAGGGATACTT TTCGTAAGGTACTGCTCGAGACATCAACTGAGGGGATGCATTCTGTTCATGTCACTGGGTGTGGCTCCGAAAACGCAGGAACAGATGAAATGGAGCCAGT CCATGGCCTTAGTGCCACTTTAGAAGAGATTGAGATTGCAAAATGCATTTCACTCAGCTGCTTCCCTCTCGACTTGTTCCACAAATTGAAAAGTCTTTCT ATCGTGAACTGTCAAAGCCTGGAATCTCTGTCAAGTAAAGAGGTCATTGAGGAGGATTTGGCTTCCCTGCGCTCTTTGAGAATTTCTGAGTGCCCTAAAT TGGTATCATTTCCAGAAGGAGGGTTGCCTGCCCCAGATTTGACTGTTCTTGCTTTATTGACATGCTCAAATCTGACTTGGCTACCAGAATATATAAACGA GCTTCCATCCCTCGTGGAGTTGACAGTGGGTCACTGTCCTGAAATCGAGTTTTTCCCTGAAGGTGGTTTGCCTTCCAAATTAGAGAAACTGGAGATCTGT GATTGTGATAAACTCATAGCTGAGCATATGCAATGGAACTTGCAGGCACTTCCCTCTCTTTTGCACTTCAGTATTGATTCAAACAAAGGACTGGAATCTT TCCCTGAAGAGACACTGCTCCCTTCCACGCTCACAACACTGTCGATTTTGAGCATTCAAAATCTGAAGTCTCTGGATCACAAAGGGATCCAGCACTTAAC GGCTCTTAAGGAGTTGAATATCAGTGCTTGCCGAAGTCTGGAATCATTTCCCATAGGGAATTGGTTTCCTACTTTGGAATCACTCCAGATTAATAGCTGC AACAAACTCATAGCCGGTCGATCACAATGGAACATACAGGCAATGACGTCTCTCTTGCACTTGAAACTGTATGAAAATGAAGAAGTTGAATCATTTACAG GGGAGATGCTGCTACCTTCCTCTCTCATCTCCCTTGACATATGGGATCTCTATGGACTGAAATCACTGGACGGACTTCAACAGCTTACTTCTCTTAGAGA ATTGAAGATTTCTCGCTGCCCCGACCTTCAGACCATTCCAGAAGGGGGTCTTCCATCTTCCTTATCTTCTCTGTCCATTCTCCGCTGCCCATTCCTGGAA CAAAGGTGTCAGCAAGACAAAGGTGAAGACTGGGCCAAGATTTCTCAGATCCCCAACCTAGAAATCGGTTGCTACAATGTTTAA
AA sequence Show only first row Show all	>Lus10002737 pacid=23162051 polypeptide=Lus10002737 locus=Lus10002737.g ID=Lus10002737.BGIv1.0 annot-version=v1.0 MELSGCKNCYCLPPLGQLVSLEKLSIKAFDNIRTVGVEFCGSATSTEKAFRSLKTLEFENMSEWEEWTSVVENDGGNYPLLVELYLTDCPKLKQTLPSNL PSLKTLRLMGCQRLRVASLPSNSVAFKMEVRDTFRKVLLETSTEGMHSVHVTGCGSENAGTDEMEPVHGLSATLEEIEIAKCISLSCFPLDLFHKLKSLS IVNCQSLESLSSKEVIEEDLASLRSLRISECPKLVSFPEGGLPAPDLTVLALLTCSNLTWLPEYINELPSLVELTVGHCPEIEFFPEGGLPSKLEKLEIC DCDKLIAEHMQWNLQALPSLLHFSIDSNKGLESFPEETLLPSTLTTLSILSIQNLKSLDHKGIQHLTALKELNISACRSLESFPIGNWFPTLESLQINSC NKLIAGRSQWNIQAMTSLLHLKLYENEEVESFTGEMLLPSSLISLDIWDLYGLKSLDGLQQLTSLRELKISRCPDLQTIPEGGLPSSLSSLSILRCPFLE QRCQQDKGEDWAKISQIPNLEIGCYNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14460			LRR and NB-ARC domains-contain...		Lus10002737 [exp]	0	1
AT3G13980			unknown protein		Lus10008457 [exp]	11.7	0.7246
AT1G64530		NLP6	Plant regulator RWP-RK family ...		Lus10032423 [exp]	17.9	0.6752
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	19.4	0.7284
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	19.5	0.7412
AT4G05160			AMP-dependent synthetase and l...		Lus10002549 [exp]	23.2	0.7100
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10038856 [exp]	25.0	0.7145
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Lus10038094 [exp]	28.8	0.7376
AT5G46070			Guanylate-binding family prote...		Lus10015390 [exp]	32.7	0.7352
AT3G33530			Transducin family protein / WD...		Lus10038096 [exp]	46.0	0.7116
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10005559 [exp]	61.7	0.7055

Compare expression of checked genes

Lus10002737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.