Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47960 68 / 4e-14 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT5G64620 47 / 2e-06 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT5G46930 44 / 2e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17220 43 / 3e-05 ATPMEI2 pectin methylesterase inhibitor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016317 [exp] 154 / 6e-48 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 92 / 1e-23 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 91 / 4e-23 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 90 / 1e-22 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017013 [exp] 74 / 1e-16 AT1G47960 112 / 4e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10037792 [exp] 72 / 5e-16 AT1G47960 91 / 1e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017040 [exp] 72 / 6e-16 AT1G47960 92 / 3e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017076 [exp] 72 / 1e-15 AT1G47960 88 / 9e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10037793 [exp] 58 / 3e-10 AT3G17152 74 / 5e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063000 [exp] 78 / 4e-18 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.009G083500 [exp] 70 / 5e-15 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.008G102600 [exp] 52 / 1e-08 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.007G108301 [exp] 51 / 4e-08 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.010G209800 [exp] 43 / 2e-05 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10002738 pacid=23162036 polypeptide=Lus10002738 locus=Lus10002738.g ID=Lus10002738.BGIv1.0 annot-version=v1.0 ATGGCGCCAAATCCCACTCCCCCACCTCTCACAAACCTCGCCAATCTCGCCGCCTTTTTCCTCCTCCTCCTCAGTTCCGGCGTCGACGCTTCTCTAATCG CCGACACCTGCAAGCAAACCCCGAACTACGACCTCTGCCTATCCTCAATCGCCGCAGACCCACGCGGCTCCAAAGCCGCCGACGTCGAAACACTCGCCCT CGTGATGATCGACGCCGTCAAGTCGAAGGCGACGGCGGCGTCCAATCGCATACAGCAGCTGATGAAAACGGCGCCCACATCGATGCGGAAGCCTCTCAGA GCCTGCGCCGAGGGTTACGACATCATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGCGC AGGGTGGGGCCGCCGTGACGGCGGCGATCATAAGGCTGTTGCTTTGATAGTTGATTAA
AA sequence Show only first row Show all	>Lus10002738 pacid=23162036 polypeptide=Lus10002738 locus=Lus10002738.g ID=Lus10002738.BGIv1.0 annot-version=v1.0 MAPNPTPPPLTNLANLAAFFLLLLSSGVDASLIADTCKQTPNYDLCLSSIAADPRGSKAADVETLALVMIDAVKSKATAASNRIQQLMKTAPTSMRKPLR ACAEGYDIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAGWGRRDGGDHKAVALIVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	0	1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016317 [exp]	1.4	0.9055
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10018153 [exp]	1.4	0.8445
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10042713 [exp]	2.6	0.8182
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	3.2	0.8210
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	6.3	0.7906
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10012753 [exp]	7.2	0.7889
AT4G17250			unknown protein		Lus10008508 [exp]	8.2	0.8251
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10014948 [exp]	8.5	0.8122
AT3G06240			F-box family protein (.1)		Lus10026587 [exp]	9.8	0.7667
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10003204 [exp]	10.6	0.7278

Compare expression of checked genes

Lus10002738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.