Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17130 122 / 3e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G47960 46 / 3e-06 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016319 [exp] 233 / 8e-79 AT3G17130 151 / 8e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10037791 [exp] 169 / 1e-53 AT3G17130 131 / 8e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10017074 [exp] 156 / 2e-48 AT3G17130 121 / 8e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10002933 [exp] 56 / 5e-10 AT1G47960 89 / 3e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10003530 [exp] 55 / 2e-09 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016317 [exp] 53 / 1e-08 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 50 / 1e-07 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 46 / 3e-06 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 45 / 5e-06 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102600 [exp] 142 / 2e-43 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.009G083500 [exp] 64 / 6e-13 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.010G063000 [exp] 61 / 1e-11 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10002739 pacid=23162041 polypeptide=Lus10002739 locus=Lus10002739.g ID=Lus10002739.BGIv1.0 annot-version=v1.0 ATGAGAATAATCTCCTCAATTCATCCTCTCCTCCTTCTAATCCTAATCCTCCTCCCATCCGCCGTCAAATCCGACGACCTAATCGAACAAGTCTGCAAAA AAACCCCCTTCTACGGCCTCTGCGCCGCCACTCTCCACTCCAACTCCTCCTCCTCTGCATCCTCCGACATCAAGAGCCTCGCCTCGTCAGCAACCAACCT TGTACTCTCCAACGCAACGGAAACACTGTCCTACATCCAGCAGCAGTTAAAGCAAACCAGAGATCCCAAGCTGGAGAAAGCTCTGGCCAACTGCGCCGAG CTCTACATTCCGGTGGTGAAGTACAATCTCCCCCAGGCAATGGACGCTTTCCTCAGGGGGTATTACGGGTTTACCAAGTACGCGCTCTCCGACGCGAGTA AGCAGGCTGATGCTTGCCAGAAGAGCTTGTCCGGCGCCGGGGCTTCCGGCGCGGGAGGGGAGTTGGGGGCGAGGAATAAGTTGTTGAGTGATTTGTGTGA TGTAGGGGCCGCCATTGTTGGGTTGCTAATGAAAGTTGGGGGTTTGAAGGTTTGA
AA sequence Show only first row Show all	>Lus10002739 pacid=23162041 polypeptide=Lus10002739 locus=Lus10002739.g ID=Lus10002739.BGIv1.0 annot-version=v1.0 MRIISSIHPLLLLILILLPSAVKSDDLIEQVCKKTPFYGLCAATLHSNSSSSASSDIKSLASSATNLVLSNATETLSYIQQQLKQTRDPKLEKALANCAE LYIPVVKYNLPQAMDAFLRGYYGFTKYALSDASKQADACQKSLSGAGASGAGGELGARNKLLSDLCDVGAAIVGLLMKVGGLKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17130			Plant invertase/pectin methyle...		Lus10002739 [exp]	0	1
AT3G17130			Plant invertase/pectin methyle...		Lus10016319 [exp]	1.0	0.9612
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10013415 [exp]	1.4	0.8851
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001015 [exp]	5.3	0.8544
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009677 [exp]	7.7	0.8773
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	7.7	0.8273
AT4G09670			Oxidoreductase family protein ...		Lus10013633 [exp]	8.5	0.8665
AT5G57500			Galactosyltransferase family p...		Lus10015527 [exp]	17.9	0.7719
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10027839 [exp]	18.2	0.8395
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	18.6	0.8596
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031877 [exp]	19.4	0.8498

Compare expression of checked genes

Lus10002739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.