Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06580 701 / 0 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) AT4G16130 64 / 2e-10 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 54 / 2e-07 Mevalonate/galactokinase family protein (.1) AT3G10700 49 / 5e-06 GalAK galacturonic acid kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037789 [exp] 815 / 0 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10017072 [exp] 778 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10023094 [exp] 652 / 0 AT3G06580 635 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016320 [exp] 573 / 0 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016321 [exp] 398 / 3e-138 AT3G06580 338 / 8e-115 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10026983 [exp] 61 / 2e-09 AT4G16130 1013 / 0.0 arabinose kinase (.1) Lus10020178 [exp] 47 / 5e-05 AT4G16130 625 / 0.0 arabinose kinase (.1) Lus10014251 [exp] 44 / 0.0002 AT3G10700 510 / 9e-180 galacturonic acid kinase (.1) Lus10025946 [exp] 43 / 0.0004 AT3G10700 532 / 0.0 galacturonic acid kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148100 [exp] 768 / 0 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.008G102800 [exp] 766 / 0 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.018G145700 [exp] 78 / 5e-15 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.006G070500 [exp] 52 / 8e-07 AT3G10700 555 / 0.0 galacturonic acid kinase (.1) Potri.018G003100 [exp] 49 / 6e-06 AT4G16130 1660 / 0.0 arabinose kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF10509 [flax] [poplar] GalKase_gal_bdg Galactokinase galactose-binding signature CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002740 pacid=23162047 polypeptide=Lus10002740 locus=Lus10002740.g ID=Lus10002740.BGIv1.0 annot-version=v1.0 ATGGCGGCGAACCACGACGAGCTCCCAGTTCCACTCTTCTCCTCCCTCGGTCCTGTATACGGCGGCGGTTCTCAACTTGAAGAAGCTCAGCACCGTTATG ACAAGTTGCAGTCCAAGTTTGTACAAGTCTTCGGCCATCTTCCCGACCTCTACGCTCGCTCTCCAGGAAGAGTGAATTTGATTGGGGAGCACATTGATTA TGAAGGGTACTCGGTTCTGCCAATGGCGATTAGGCAGGATACGATCGTGGCGATTCGTAAGCGATCTCCTTCGGAAACGGAGAAGCTTCTCCGGATTGCT AATGTCAACGATAAGTACACGACTTGCACTTACCCTGCGGATCCTAATCAGGAAATTGACTTGAAGAATCACAAATGGGGTCATTATTTCATCTGCGGGT ATAAAGGTTATTATGAATACGCCAAAGAAAAAGGGATAGAAGTTGGAGTCCCAGTTGGGCTCGATGTTATGATTGATGGAACTGTTCCTACTGGTTCCGG ACTTTCAAGCTCTGCTGCATTTGTTTGTTCATCCACCATAGCGATTATGGCTGCTTTCGGTGTCAGCATCCCAAAGAAAGAAGTTGCTCAGCTTACATGT GATTGTGAGAGGCACATAGGAACACAATCAGGAGGAATGGATCAGGCAATTTCGGTTATGGCAAAGGCTGGATTCGCAGAACTTATTGATTTTAACCCTG TTCGAGCAACTGATGTGCATCTTCCAGATGGTGGGACTTTTGTGATTGCGCATTCTTTAGCAGAATCTCAAAAGGCAGTCACTGCTGCCACTAACTACAA TAACAGAGTTGTTGAATGCCGCTTAGGTTCTATCATACTTGGAATTAAACTGGGAATGAAACCAGATGAAGCAAGATCAAAAGTCAAAACTCTGTCTGAT GTAGAAGGGTTGTGCATATCTTTTGCTGCCGAACGTAATTCTTCTGATCCTGTTATTGCTGTTAAGGAATTTTTGAAAGAGGAACCATATACCGCTGAAG AGATGGAGGAAATAATTGGAGAAAAGCTGACATCTACCTTTGGCAGTTCTGTCTCTTCATTGGAAGTGCTAAAGGCAGCCAAGCACTTCAAATTACGTCA GTTTGGACAATGGATTTTAGTGCCTGGTTCCTTTAGAGTCGATGATGAGAAGCTGAAGAAGCTCGGGGAGCTAATGAATGATAGCCACCACAGTTGCAGT GTTCTTTATGAATGCAGCTGCCCGGAGTTGGAGGAGCTTGTAAAGGTCTGCCGCGAGAATGGAGCATTAGGGGCTAGGCTAACTGGTGCTGGATGGGGAG GTTGTGCAGTTGCGTTGGTGAAGGAAGCCATTGTCCCACAGTTCATCATAAATTTAAAGGAGAAATTCTACCAGTCGAGGATCGAGAAAGGGGTAATCAA CAAGAACGAACTTGGACTCTACGTGTTTGCTTCGAAGCCTTCGAGTGGAGCTGCCATTTTCAAATTCTAG
AA sequence Show only first row Show all	>Lus10002740 pacid=23162047 polypeptide=Lus10002740 locus=Lus10002740.g ID=Lus10002740.BGIv1.0 annot-version=v1.0 MAANHDELPVPLFSSLGPVYGGGSQLEEAQHRYDKLQSKFVQVFGHLPDLYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKRSPSETEKLLRIA NVNDKYTTCTYPADPNQEIDLKNHKWGHYFICGYKGYYEYAKEKGIEVGVPVGLDVMIDGTVPTGSGLSSSAAFVCSSTIAIMAAFGVSIPKKEVAQLTC DCERHIGTQSGGMDQAISVMAKAGFAELIDFNPVRATDVHLPDGGTFVIAHSLAESQKAVTAATNYNNRVVECRLGSIILGIKLGMKPDEARSKVKTLSD VEGLCISFAAERNSSDPVIAVKEFLKEEPYTAEEMEEIIGEKLTSTFGSSVSSLEVLKAAKHFKLRQFGQWILVPGSFRVDDEKLKKLGELMNDSHHSCS VLYECSCPELEELVKVCRENGALGARLTGAGWGGCAVALVKEAIVPQFIINLKEKFYQSRIEKGVINKNELGLYVFASKPSSGAAIFKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10002740 [exp]	0	1
AT5G66930			unknown protein		Lus10019643 [exp]	7.3	0.9298
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	9.2	0.9269
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10016320 [exp]	12.1	0.8630
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	12.5	0.9021
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10008686 [exp]	15.7	0.9198
AT5G66810			unknown protein		Lus10022461 [exp]	21.9	0.8873
AT1G58030		CAT2	cationic amino acid transporte...		Lus10001334 [exp]	22.8	0.9240
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10023512 [exp]	23.0	0.8929
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009678 [exp]	24.2	0.9026
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	27.5	0.9084

Compare expression of checked genes

Lus10002740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.