Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 335 / 3e-100 disease resistance family protein / LRR family protein (.1) AT2G15080 241 / 2e-66 AtRLP19 receptor like protein 19 (.1.2) AT4G20140 243 / 3e-66 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G58190 237 / 7e-65 AtRLP9 receptor like protein 9 (.1.2) AT4G13920 234 / 2e-64 AtRLP50 receptor like protein 50 (.1) AT3G05660 230 / 5e-63 AtRLP33 receptor like protein 33 (.1) AT3G11010 226 / 1e-61 AtRLP34 receptor like protein 34 (.1) AT5G44700 228 / 2e-61 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G40170 217 / 6e-59 AtRLP54 receptor like protein 54 (.1) AT3G05650 212 / 5e-57 AtRLP32 receptor like protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016324 [exp] 1110 / 0 AT4G20140 268 / 9e-78 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10039512 [exp] 926 / 0 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10016325 [exp] 677 / 0 AT2G34930 206 / 4e-59 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 642 / 0 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 641 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 640 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 635 / 0 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 634 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 632 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 472 / 4e-156 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 484 / 1e-154 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 447 / 2e-141 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 447 / 3e-141 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 447 / 4e-141 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 443 / 6e-140 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 445 / 5e-139 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 439 / 2e-138 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 442 / 5e-138 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 438 / 6e-138 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002742 pacid=23162038 polypeptide=Lus10002742 locus=Lus10002742.g ID=Lus10002742.BGIv1.0 annot-version=v1.0 ATGACTATTACATCTGCTTCTGCTATTCTGTGTTTCTGGTTGTTCTTCTCAGCAATCAGAAGCTTCACATTCTGCCACGGAGCCCTTGGCAGCCAGATCT GCCAGGCTGGCGAAAGGCAGGCTCTTTTGGAGCTCAAAGGCAGTTTGGTGGACCCTTCTGACTGGCTCAAGTCCTGGTCAGCCGGCCGAAGCAGCCATGG AGATTGCTGCAAATGGTCTGGAGTTGTCTGCAGCAACGTCACAGGTCATGTCATCGAGCTCCATCTCGGCGCAGCAGATTTGCCCGAGTTCACGACCTTC AGTGGAGAAATCAACCCTTCTCTGGCGAAATTAAACCAGCTGAGATACTTGGACCTCAGTGGCAATGACTTTTCGGGATTCCCCATACCTGAATTCATTG GCTCCCTCTCGAACTTGATGCAGCTCAACCTTTCCGGTGCAGGATTCTCAGGAACCATCCCTTATAAACAGCTTGGAAGCCTCACCAAGCTGAGCTACCT TAACTTGCTAGGTAACTACGGCGGGGAGTTGTACCTTGAAAATCTTGATTGGGTTTCGAGTCTCCTTTCCTTGAAGTTCTTGTCTTTGAGCTATGTGGAT CTTAGCCGCGTGAAGAATAATTGGCTCACAGTGTTGAACAAAGTTCCTTCCTTGGAAGAACTTCACCTGTCAAATTGTCAACTTGGTTTCATTCCCAATT CTCTCCCTAAAGTCAACCTTTCATCGCTTTCTCTACTTGATCTCTCTTACAACAACTTCAATGATCCTTTGTTCCCCACTTGGACCTTCTATCTCCATTC TTTAACCTCTCTCGATCTCGCCAATAACAGATTCAGCGGCCCGATTCCTGAGGGTCTCCGTAACATGTCTTTATTAAGTCAACTCGACTTGTCTTGGAAC CACTTCACTTCCTTGGAGGCAAACTGCTTTTTGGGGCTAACCCGCATGGAAGTACTCAGCATGGCTCATAACGACTTGAAAGGCGAAATATTTTCGAGTG CGATGCAAAACATGACTTTTCTGATAGACCTGGATTTGTCCTCTAATGAGCTTGAGTCTGCTGTTGGAATTCCAGAATACTTCAGCAACTTTTGCAGCTT GAGGGTAATTAATCTGTCAGGAGTCCGATTAAGGCAAGAGGTCGGTGAAGCGCTACGCGTTCTGTCAGAATGTCCTGCGAGTACTTTGGAGACAATTCGG ATGTCGAATTGTCAACTGTTTGGAAACCTGATGAACATTCCTTTCCGCAACTTTCAGAAGCTGGACACTCTTTCCTTGTCAAGGAACTTAATTTCAGGTC GAGTTCCATTGCCCATAACAGATATGGTATCGCTGCGGTCCCTGGAGCTTTTCAGCAACAGATTGGTTGGACCTCTTCCTTCAAGTCTCGGAAGCCTCTC GAATTTGGAATCCATCGACATCTCCGAAAACTCACTGGAGGGTGAAGTTGCAGAATCTCATTTCCAGAACTTCACAAAACTATGGCTTTTCCAAGCATCT GGAAACCAACTTAGCTTGAAAGTTGGCCCGAGGTGGAACCCTCCACCACAAATAGGGATTCTTGGGATGGGATTCTGGCATTTAGGACCCCAGTTTCCTG TCTGGATTCGGTCGTTGAAGCTTTTGACACAGCTGAATATGTCGAGCTCTGGAATTTCAAGCTCGATTCCTCCTTGGTTGTTCTTCAACTCTCATTTCTA CAGCATTGATATGAGTTCAAATCTGTTGAATGGTTCGCTGCCGTACATCTACCCGTTCATGAGCGTGCTGGACCTTTCGAACAATTCTCTTTCAGGGTCT CTATCGAATTTCCTGTGTTACAAACCGGAAGAAGAGAAAACAATGCAAGTTATGAACCTCGGAGCAAACGAATTCAGCGGAGAGATTCCTGATTGCTGGA CGAGTTGGAAGTATCTGGAGGCTATGAAGTTGAGCAGCAACAAGTTCGGAGGTAGCATTCCTCGATCCCTAGGAACATTGTCGTTCCTCCAGTCGCTTCA CCTGAGAAACAACAATTTATCTGGCGAAATACCACAATCATTCGCAAACATCACCAAGTTGGTCGCTCTCGACTTCAGCAAGAACAAACTGGAAGGAATC TTGCCAGCTTGGATAGGAACAAGGCTTTCAGGAATGATGATTCTTAATCTCAGAGAAAACAAGTTCCATGGTAGCATACCGAACGAGCTTTGTCTGGCGA AATCACTGCGAATTCTCGATCTTGCTGACAACAATATAACTGGTTATATCCCCAGATGTGTCAACAACTTCACTGCAATGGTTAAAATGGATGACACCGA AGGTATCATTCAGCTCAGCTACAATGGTACAGGTCCGTTCTTCGAGACAGCATTGGTTGTGATCAAAGGAAAGCTATACGAATACGGCTCGATCCTGAAG TTCGTGAGAAGCATAGACCTGTCAAAGAACAAACTAGTTGGAGAGATACCTGACGGGATGACTAAACTTGGAGGCTTGCAGTCGCTAAACCTGTCCGATA ATTTCTTGACCGGAGTCATCCCTCGAGACATAGGATCCATGGGAGCACTCGAATCGATCGACCTCTCTGTCAACCAACTCACTGGCGAAATCCCTCCGAG CATTTCAAGCATGACGTTCCTCAGCTTTATAAACATTTCTTCTAACAGATTGACTGGAAGGATTCCTTTGAGTACTCAACTGCAGAGCCTCAACTCCTCC AGCTTTGCAGGAAACAAGGATCTTTGCGGTTCTCCACTGGCAAAATGCAGAACAGATAACACAACAGTTGACAGCAACGGAAACAGAACAGATCAGAAGC CTGAAGATGATGGAAATGATCCGGGGATAAAATGGTTTTACGTGAGCTTGGCGCTCGGATTCATACTTGGTTTCTGGGGTGTGGTTGGTTCGATGGTACT CAATAACCAGTGGAGGATTGGCTACTTCCATTTTGTGGACCGTTTGTGGGACAGACTATGCTGCCGCCTCTAA
AA sequence Show only first row Show all	>Lus10002742 pacid=23162038 polypeptide=Lus10002742 locus=Lus10002742.g ID=Lus10002742.BGIv1.0 annot-version=v1.0 MTITSASAILCFWLFFSAIRSFTFCHGALGSQICQAGERQALLELKGSLVDPSDWLKSWSAGRSSHGDCCKWSGVVCSNVTGHVIELHLGAADLPEFTTF SGEINPSLAKLNQLRYLDLSGNDFSGFPIPEFIGSLSNLMQLNLSGAGFSGTIPYKQLGSLTKLSYLNLLGNYGGELYLENLDWVSSLLSLKFLSLSYVD LSRVKNNWLTVLNKVPSLEELHLSNCQLGFIPNSLPKVNLSSLSLLDLSYNNFNDPLFPTWTFYLHSLTSLDLANNRFSGPIPEGLRNMSLLSQLDLSWN HFTSLEANCFLGLTRMEVLSMAHNDLKGEIFSSAMQNMTFLIDLDLSSNELESAVGIPEYFSNFCSLRVINLSGVRLRQEVGEALRVLSECPASTLETIR MSNCQLFGNLMNIPFRNFQKLDTLSLSRNLISGRVPLPITDMVSLRSLELFSNRLVGPLPSSLGSLSNLESIDISENSLEGEVAESHFQNFTKLWLFQAS GNQLSLKVGPRWNPPPQIGILGMGFWHLGPQFPVWIRSLKLLTQLNMSSSGISSSIPPWLFFNSHFYSIDMSSNLLNGSLPYIYPFMSVLDLSNNSLSGS LSNFLCYKPEEEKTMQVMNLGANEFSGEIPDCWTSWKYLEAMKLSSNKFGGSIPRSLGTLSFLQSLHLRNNNLSGEIPQSFANITKLVALDFSKNKLEGI LPAWIGTRLSGMMILNLRENKFHGSIPNELCLAKSLRILDLADNNITGYIPRCVNNFTAMVKMDDTEGIIQLSYNGTGPFFETALVVIKGKLYEYGSILK FVRSIDLSKNKLVGEIPDGMTKLGGLQSLNLSDNFLTGVIPRDIGSMGALESIDLSVNQLTGEIPPSISSMTFLSFINISSNRLTGRIPLSTQLQSLNSS SFAGNKDLCGSPLAKCRTDNTTVDSNGNRTDQKPEDDGNDPGIKWFYVSLALGFILGFWGVVGSMVLNNQWRIGYFHFVDRLWDRLCCRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	0	1
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	1.4	0.8779
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020935 [exp]	2.4	0.8486
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10003670 [exp]	2.6	0.8076
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	5.9	0.8325
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	6.5	0.8144
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	8.2	0.7804
AT5G57500			Galactosyltransferase family p...		Lus10019998 [exp]	13.3	0.8451
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	15.2	0.8060
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	17.3	0.7888
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10041302 [exp]	20.1	0.7538

Compare expression of checked genes

Lus10002742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.