Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 449 / 9e-143 disease resistance family protein / LRR family protein (.1) AT4G13920 261 / 2e-73 AtRLP50 receptor like protein 50 (.1) AT4G20140 261 / 2e-72 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 258 / 5e-71 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G27060 248 / 1e-68 AtRLP53 receptor like protein 53 (.1) AT1G71400 238 / 8e-66 AtRLP12 receptor like protein 12 (.1) AT2G15080 233 / 2e-63 AtRLP19 receptor like protein 19 (.1.2) AT3G11010 230 / 6e-63 AtRLP34 receptor like protein 34 (.1) AT4G04220 228 / 1e-62 AtRLP46 receptor like protein 46 (.1) AT5G07280 229 / 2e-61 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016326 [exp] 1705 / 0 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1023 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10039514 [exp] 1013 / 0 AT2G34930 447 / 6e-142 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1005 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 999 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 998 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 994 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 989 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 977 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107000 [exp] 550 / 3e-180 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 548 / 2e-179 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 533 / 3e-173 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 529 / 7e-171 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 522 / 8e-170 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 520 / 3e-169 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 518 / 1e-168 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 509 / 6e-165 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 504 / 8e-162 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 485 / 4e-155 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002743 pacid=23162035 polypeptide=Lus10002743 locus=Lus10002743.g ID=Lus10002743.BGIv1.0 annot-version=v1.0 ATGACTTCTCTTACAGTTCTTGTTTGGCTGAGCTGGATGATCTGCTTTACTTCTGGTGAAGGCTGCATTCAATCTGAAAGAGAAGCTCTTCTGGAATTCA AGGCTGGTCTTGAAGACCCTGCAAGCTTCTTATCATCTTGGATTCCCCAAGAGGATTGCTGCACATGGTTCGGTGTCGTATGCAACGGTGAAAACTCCAC TACTGGCCACGTCACTGAGCTTCATCTTGGGCGGCCTTCTTCCTCCTTTCGGAAGAACTCTGTGTTTAGCGGTAAGCTAAATCCTTCACTGCTTGAGTTG AAACATCTGAGTTATTTGGACCTTTCATACAACAACTTTCAAGGGATTTCAGTTCCGAGTTTCTTGGGCTCCATCACTAGTTTAAACTATCTGTTCCTTG ACGGAGCTGGATTCAGAGGAGTTATTCCTCATCAACTGGGGAACCTCTCAAATTTGCAGCATCTTGGTTTGAAGGCTGGACGTTATTATGTGCTATATGC TGATAGTTTGCAGTGGATTTCCGGTCTGCATTCACTTGAATATCTTGATTTGAGCTCTGTTGATCTTAGCAATGCATCCGACTGGCTGAACATGATAAAC ACTCTCCCATCTCTATTGAAATTGTATCTTTCGAGATGTCGAATTCGTCTCATCCCTCCGATCAAAAACCTAAACCTCTCATCGTTGTCTGCTCTCGATT TATACCACAATAATTTCTCCCAAACTTCGGTTCCTAGTTGGATTTCTTCTCTTCACAGCCTTACTTATTTAGATCTAGGATTCAACAATTTCAGAGGTTC GTTTCCTGATGAGCTCCGAAACCTTACTTCACTCAAGACCCTTTCCTTGTCTTCCAATCATTTCAATTCTTCAATACCAAACTGGCTATACAGTTTACAT AATCTGGAGATTCTCGACTTGTCTACAAACAAGTTGCACGGTGGTATCTTGAAAGAGATTGGCAACTTGTCCTCTATTGTCCGCCTGGAGTTGTCATTGA ATGATGGCCTTGAATTCGAGGAGGGGACTCCGGAGTTGTTTGAAGGCTTTTGCCGTTTAAGCTCGCTTTCTCTGTCTGGTGTGAAACTGAATCAAAGTGT GTCACAGTTGCTTGATACCCTTGGACAATGTGCTTATAATACGTTGCAGGTGTTGTCTTTGCGTGATTGTCAACTGTTCGGTCCGTTGACCGATGAGATT GGGAAATTCAAGACACTAAGGCGTCTCATTCTTGCTAACAATTCGATATCTGGTCCGCTTCCTGTGTTATTTGGAGGGATGGAATCCTTGGTTTTTGTGG ATATCTCGAGGAACAAGATTAATGGGACGATTCCGGGAAGTTTTGGGCTGTTGGAAGAGTTGAGTTATGCTGATATATCTCAGAACTCAATGCAAGGTCT TGTTTTCCCTGAAATTCAGTTTGCCAACCTCTCAAATTTGTCTAGCTTTCTTGCGTTTGATAACCAGTTGGTGTTGAAAGCTAAACCGGAATGGTCTCCC TCCAAGCAGCTTATGCAATTGAGCTTAGGATCCTGGTACCTTGGACCTGGATTTCCTCATTGGCTGCAAAATTTAGAGTATCTGAACTCTCTTGATCTGT TCAACTCTGGAATTTCCAAACCGTTTCCTGAATGGTTCTGGAATATGTCGTCTCAGTTTTACTATCTGAATTTCTCTCACAACCAAATCCCTGGAAGGCT TCCACATGTCATCTCTGTTGTTAGCACTTTCTCATTGTTTGATTTCAGTTTCAATTGCTTGGAAGGTCCGCTGCCTACGATCTCGCCGGAGTTGACCTTT TTGGACCTTTCCAACAATTTACTCTCCGGGAACTTACTCAAGTTCCTGTGTTTCAACCCGAGTCAGATGAAGGATATGGAATATCTCAGCCTGCAGAGTA ATCGTTTGACCGGTGAGATACCGAATTGTTGGAAGCATTGGCAGAACTTGAAAGCCATAAGGCTGGGGAACAACAAGTTTAGTGGCGAAATTCCAAATTC TATAGGGTATCTAAGCTCCCTTAGAGCTCTGCGTCTTCAGAATCTCAGCCTAACCGGTGAGATTCCTGCTTCCCTTGGGAATTGTTCTAGGTTAGTCTCT GTCGGATTGGGTCAGAATCAATTGGAAGGGAACATTCCGAAATGGATTGGGCGAAGCCTTCCGGATTTATCCATCCTTAGTCTGGGGTGGAATAAATTCC ATGGCAGCATACCTGGGGAGATCTGTAACCTGCAATCTCTGCAAATTTTGGATCTTTCTCACAATTACCTTAATGGTACCGTGCCGGAATGTGTGGCGAA TCTCAGTGCAATGGCTAGAGCAACCAATGATACTTCAGGCATCATTCAGGTCTTTGCTGGGATGAGCTATTCGTATCCGGACACTCAAATGGTGGTGGCC AAAGGGCAGTTGTTGGATTACAGCACCATACTGAACTACGTCAGAAGTTTCGACCTTTCCAGTAATAACTTGTCGGGAGAGATCCCAAAGCAGATCACAA GCTTGAAGGCGTTAAAATATCTGAACTTATCACACAATTCGTTCTCAGGTGCAATTCCGGAAGGTCTAACTGAAATGCAGTCTCTGGAATCCATGGATTT ATCTGATAATCAACTCTCTGGAGTAATCCCTTCAAGTCTAGGAGGTCTGACATTCTTGAGTCATTTGAACTTGTCCTGCAACAACTTGGATGGTAAAATC CCTTCAAGCACTCAACTGCAGAGCTTTGATTCATCCAGCTTCACCGGCAACCGAGAACTCTGTGGTCCCCCGTTGCGCGTGAACTGCAGCATTCGAAGCA GCGTAGTACCCGGTTTTGAAGATGATGAAGAATTTTCACTGCATTGGTTATCTCATAGCGACGTTCTTGGTTTTGTTGCTGGTTTCTGGGCTGTGGTTGG TACTTTTGCTTTGAATCAAGAGTCTAGCAAAATTTACTTTGAGTTTGTTGATCTTATAGGCAAAAAGTTGTGGAGTTTGTTAATTCGATCACTGAAGTAG
AA sequence Show only first row Show all	>Lus10002743 pacid=23162035 polypeptide=Lus10002743 locus=Lus10002743.g ID=Lus10002743.BGIv1.0 annot-version=v1.0 MTSLTVLVWLSWMICFTSGEGCIQSEREALLEFKAGLEDPASFLSSWIPQEDCCTWFGVVCNGENSTTGHVTELHLGRPSSSFRKNSVFSGKLNPSLLEL KHLSYLDLSYNNFQGISVPSFLGSITSLNYLFLDGAGFRGVIPHQLGNLSNLQHLGLKAGRYYVLYADSLQWISGLHSLEYLDLSSVDLSNASDWLNMIN TLPSLLKLYLSRCRIRLIPPIKNLNLSSLSALDLYHNNFSQTSVPSWISSLHSLTYLDLGFNNFRGSFPDELRNLTSLKTLSLSSNHFNSSIPNWLYSLH NLEILDLSTNKLHGGILKEIGNLSSIVRLELSLNDGLEFEEGTPELFEGFCRLSSLSLSGVKLNQSVSQLLDTLGQCAYNTLQVLSLRDCQLFGPLTDEI GKFKTLRRLILANNSISGPLPVLFGGMESLVFVDISRNKINGTIPGSFGLLEELSYADISQNSMQGLVFPEIQFANLSNLSSFLAFDNQLVLKAKPEWSP SKQLMQLSLGSWYLGPGFPHWLQNLEYLNSLDLFNSGISKPFPEWFWNMSSQFYYLNFSHNQIPGRLPHVISVVSTFSLFDFSFNCLEGPLPTISPELTF LDLSNNLLSGNLLKFLCFNPSQMKDMEYLSLQSNRLTGEIPNCWKHWQNLKAIRLGNNKFSGEIPNSIGYLSSLRALRLQNLSLTGEIPASLGNCSRLVS VGLGQNQLEGNIPKWIGRSLPDLSILSLGWNKFHGSIPGEICNLQSLQILDLSHNYLNGTVPECVANLSAMARATNDTSGIIQVFAGMSYSYPDTQMVVA KGQLLDYSTILNYVRSFDLSSNNLSGEIPKQITSLKALKYLNLSHNSFSGAIPEGLTEMQSLESMDLSDNQLSGVIPSSLGGLTFLSHLNLSCNNLDGKI PSSTQLQSFDSSSFTGNRELCGPPLRVNCSIRSSVVPGFEDDEEFSLHWLSHSDVLGFVAGFWAVVGTFALNQESSKIYFEFVDLIGKKLWSLLIRSLK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10002743 [exp]	0	1
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	29.2	0.6903
AT2G27830			unknown protein		Lus10015082 [exp]	35.9	0.6510
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10011011 [exp]	36.7	0.6862
AT5G66420			unknown protein		Lus10014286 [exp]	63.7	0.5871
AT1G58025			DNA-binding bromodomain-contai...		Lus10035797 [exp]	84.3	0.6175
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10035727 [exp]	85.0	0.6532
AT1G21590			Protein kinase protein with ad...		Lus10023981 [exp]	92.2	0.6157
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	100.4	0.6374
AT1G11390			Protein kinase superfamily pro...		Lus10002591 [exp]	107.5	0.6220
AT5G20950			Glycosyl hydrolase family prot...		Lus10023604 [exp]	122.2	0.6298

Compare expression of checked genes

Lus10002743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.