Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06690 496 / 9e-177 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 192 / 3e-58 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 102 / 1e-24 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 99 / 4e-23 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 92 / 1e-20 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 91 / 2e-20 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 91 / 3e-20 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60690 88 / 3e-19 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G27680 84 / 1e-17 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 71 / 3e-13 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016327 [exp] 667 / 0 AT1G06690 510 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 110 / 4e-27 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 98 / 1e-22 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 95 / 1e-21 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 95 / 1e-21 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 89 / 1e-19 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010340 [exp] 88 / 7e-19 AT1G04420 606 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 86 / 2e-18 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 84 / 8e-18 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055500 [exp] 528 / 0 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 526 / 0 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 476 / 2e-169 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 211 / 3e-65 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 102 / 2e-24 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 98 / 8e-23 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 98 / 9e-23 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 91 / 2e-20 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 90 / 6e-20 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 86 / 1e-18 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10002744 pacid=23162056 polypeptide=Lus10002744 locus=Lus10002744.g ID=Lus10002744.BGIv1.0 annot-version=v1.0 ATGGCGACTACTATGGCTACGCAAGTTGGTACAGCCTCCTTCTCTCCTGGTTTTGCTCGGAAACAGCAACGGAGGAGGTCTTCCTGCCGGATTGTGGTTC CCAGAGCTACTGCTGCTGCTTCCGGCGATTTGGCATCTTCGACTGTGGAAGATGACAAAGTGAAGTTAGGAGGATCCGATTTGAAGGTCACAAAGCTCGG AATTGGTGCTTGGTCTTGGGGCGACACCAGCTACTGGAACAATTTTCAATGGGACGATAGAAAACTCAAGGATGCTAGGGCTGCTTTCAATGCAAGTATT GATTCTGGCATTACTCTCATTGATACAGCTGAAGTTTATGGCTCCAGGGCATCATTTGGTGCCATCAGTTCTGAAACCCTACTTGGAAGATTCATCAGCG AGAGAAAGAAATCAGAACCTGATTTGGAGGTGGCTATTGCCACCAAGTTCGCCGCATTGCCATGGAGGCTGGGACGTGAGAGTGTCCTAAGCGCTCTTAA GGATTCCCTAAGCCGCCTTGGAGTATCCTCAGTGGAACTATTTCAGAAGGAAATACCGATCATCCCAAGTTCATTTTCAGGGTATATAGATGGTCTTGGA GATGCAGTTGAGCAGGGCCTAGTGAAGGCTGTTGGCGTTTCAAACTACAGCGAGAAACGTCTCCGAGCTTCTTACGAGAAGCTCAAGCAAAGAGGCATCC CACTAGCCTCAAACCAGGTAAATTACAGTCTTATATACAGAAAACCAGAGGAAAATGGAGTTAAGGCAGCTTGTGATGAACTTGGAGTCACTGTGATTGC ATATAGTCCGATTGCTCAAGGTGCTCTTACTGGAAAATATACACCAGAGAACCCGCCTAGTGGACCTCGTGGCAGGATTTACACTCCTGAAGTTCTAACA AAGGTAGTCCTCAACTGGTTGATATCTCAAGACAATGTTATTCCAATCCCCGGAGCCAAATCTGCAGAACAGGCTAACGAGTTTGCTGGTGCAATTGGTT GGAGACTTTCAACTGAAGAGATTGATGAACTGCGGTCCATGGCATCAGAATTAACTCCAGTTGTCGGTTTTCCGGTTGAAAGGCTGTAG
AA sequence Show only first row Show all	>Lus10002744 pacid=23162056 polypeptide=Lus10002744 locus=Lus10002744.g ID=Lus10002744.BGIv1.0 annot-version=v1.0 MATTMATQVGTASFSPGFARKQQRRRSSCRIVVPRATAAASGDLASSTVEDDKVKLGGSDLKVTKLGIGAWSWGDTSYWNNFQWDDRKLKDARAAFNASI DSGITLIDTAEVYGSRASFGAISSETLLGRFISERKKSEPDLEVAIATKFAALPWRLGRESVLSALKDSLSRLGVSSVELFQKEIPIIPSSFSGYIDGLG DAVEQGLVKAVGVSNYSEKRLRASYEKLKQRGIPLASNQVNYSLIYRKPEENGVKAACDELGVTVIAYSPIAQGALTGKYTPENPPSGPRGRIYTPEVLT KVVLNWLISQDNVIPIPGAKSAEQANEFAGAIGWRLSTEEIDELRSMASELTPVVGFPVERL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10002744 [exp]	0	1
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10016327 [exp]	1.7	0.9611
AT5G03880			Thioredoxin family protein (.1...		Lus10021357 [exp]	1.7	0.9519
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	4.0	0.9534
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	6.6	0.9417
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10020553 [exp]	6.7	0.9396
AT3G19900			unknown protein		Lus10029066 [exp]	7.3	0.9122
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	13.3	0.9240
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	13.7	0.9273
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Lus10019342 [exp]	14.0	0.9051
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	14.1	0.9277

Compare expression of checked genes

Lus10002744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.