Plant FIBer expression Database

Lus10002745 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55850 689 / 0 LAF3 ISF2, LAF3 ISF1, LAF, LAF3ISF2, LAF3ISF1 LAF3 ISOFORM 2, LONG AFTER FAR-RED 3 ISOFORM 1, LONG AFTER FAR-RED 3, Amidohydrolase family (.1.2)
AT1G67550 46 / 6e-05 URE urease (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016328
[exp]
931 / 0 AT3G55850 712 / 0.0 LAF3 ISOFORM 2, LONG AFTER FAR-RED 3 ISOFORM 1, LONG AFTER FAR-RED 3, Amidohydrolase family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G196300
[exp]
775 / 0 AT3G55850 704 / 0.0 LAF3 ISOFORM 2, LONG AFTER FAR-RED 3 ISOFORM 1, LONG AFTER FAR-RED 3, Amidohydrolase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0034 Amidohydrolase PF07969 Amidohydro_3 Amidohydrolase family
Representative CDS sequence
>Lus10002745 pacid=23162049 polypeptide=Lus10002745 locus=Lus10002745.g ID=Lus10002745.BGIv1.0 annot-version=v1.0
ATGAATCTCCTCCTGATTCTCTCGGCCGCCGTTGCTCTTTCCGTCGCCGTTCTGTATCTTCCACTCCTCAATTCCCCCAAGTTGTTTAATTTCAGCCTCA
ACGGTCGGCTCTCGTCGTCCAACTCAGGAGCAGAACCCTTCGCAGAATTAGTGCTGAAAAATGGCGTCATTTTCACGAGTGATGCTTCAGTTCCTTTCGC
CGATTACATGGCGGTGAGTAACGGAAGGATTCTCCGGATAGGAAACTATTCGTCACTCCAGGGTTTGATCGGAAATGAGACTGAGCTGCTGAATCTTGAA
GGGAAGGTTGTCGTTCCTGGGTTTATAGATTCTCATGTCCATTTCATTCCGGGTGGATTGCAGGTTTCGCACGATGCAAAACAAGGTTCGTGGATCTTGG
GTGGTGGATGGAACAATGATATGTGGGGCGGAGAATTACCAATGGCATCATGGCTCGACGATTTCAGTGCAAACAATCCTGTGTGGTTAACGAGGATGGA
TGGCCACATGGGGTTGGCCAACTCACTTGCACTGAAGCTGGCTGGCATCAGTAAGTTGTCGGAGGATCCTAGGGGGGGAACTATAATGAAAACTCCTAGT
GGAGAACCTACAGGACTGTTGATTGATGCTGCAATGAAACTCATCCTTGCTGTGATTCCGGAGGTTTCTGTTACTCAAAGGCGGGAAGCTTTGCTCAGGG
CTACAAATCTTTCCTTGGCGAGGGGTGTGACTAGTGTTGTTGACTTTGGAAGATACTTTCCCGGAGCATCACCAGAAGATCCGTGGGAGGACTTGTCAGA
TGTATATCAATGGGCTGATAATTCAGGGCAGTTGAGGACCAGGATGTGCATCTTCTTCCCAATGGAGACATGGTCTCGACTAGCTGATGTTATGAAGAAA
ACTGGGCGTGTTCTGAGTGATAGGATTTATTTGGGAGGTGTTAAAGCCTTTGCTGATGGTTCTTTAGGGTCAAATAGTGCACTGTTCTATGAGCCTTATG
TTGGAGAGCCTCAGAATACTGGCCTTCAATTGATAGATATGAAGAGTCTCCTCAACATGACTGCAGCTTCAGATAAATTTGGACTCCAGGTTGCCATTCA
TGCTATTGGTGACAAAGCAAATGACATGGTCCTAGAGGTGTACAAATCTGTTGTTTCAACAAATGGAAATAGAGATAGAAGATTCAGGATTGAGCATGCC
CAGCACTTGGCACCTGGAGCCACTAATCAATTTGGTGACCAGAAGATCTTTGCTTCAGTGCAGCCAGATCACCTACTTGATGATGCCGACACTGCATCAA
AAAAACTTGGGACAGAAAGAGCTCAGACAGGGTCTTACCTATTTCATTCCCTTCTGGATAGCAATGCACCGTTGGCATTGGGATCTGATTGGCCTGTTGC
AGACATTAATCCATTAGGGAGCATAAGAACAGCGATGAAAAGAATACCCCCTGGTTGGGAAACCGCTTGGAATCCAGATCAGCGCCTTTCCCTGACTGAT
GCACTGATTGCAAGTTCTACTTGTTGTGGTGGCAGGCACACTATATCAGCAGCTGAAGCATGCTTTCTAGATGAGTACGTGGGGTCTTTATCGCCTGGAA
AGTTGGCTGATTTCGTGATACTTTCTTTCGACTCGTGGGAGAAGTTCGAGGAAGACGGAGCTGCTTCAGTTCAGGCAACATACCTCGGCGGTGTAAAGGC
GTATCCATAG
AA sequence
>Lus10002745 pacid=23162049 polypeptide=Lus10002745 locus=Lus10002745.g ID=Lus10002745.BGIv1.0 annot-version=v1.0
MNLLLILSAAVALSVAVLYLPLLNSPKLFNFSLNGRLSSSNSGAEPFAELVLKNGVIFTSDASVPFADYMAVSNGRILRIGNYSSLQGLIGNETELLNLE
GKVVVPGFIDSHVHFIPGGLQVSHDAKQGSWILGGGWNNDMWGGELPMASWLDDFSANNPVWLTRMDGHMGLANSLALKLAGISKLSEDPRGGTIMKTPS
GEPTGLLIDAAMKLILAVIPEVSVTQRREALLRATNLSLARGVTSVVDFGRYFPGASPEDPWEDLSDVYQWADNSGQLRTRMCIFFPMETWSRLADVMKK
TGRVLSDRIYLGGVKAFADGSLGSNSALFYEPYVGEPQNTGLQLIDMKSLLNMTAASDKFGLQVAIHAIGDKANDMVLEVYKSVVSTNGNRDRRFRIEHA
QHLAPGATNQFGDQKIFASVQPDHLLDDADTASKKLGTERAQTGSYLFHSLLDSNAPLALGSDWPVADINPLGSIRTAMKRIPPGWETAWNPDQRLSLTD
ALIASSTCCGGRHTISAAEACFLDEYVGSLSPGKLADFVILSFDSWEKFEEDGAASVQATYLGGVKAYP

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G55850 LAF3 ISF2, LAF3... LAF3 ISOFORM 2, LONG AFTER FAR... Lus10002745
[exp]
0 1
AT5G40660 ATP12 protein-related (.1) Lus10000142
[exp]
5.7 0.8302
AT5G08010 unknown protein Lus10040520
[exp]
5.7 0.8374
AT1G63110 GPI transamidase subunit PIG-U... Lus10029590
[exp]
6.9 0.8125
AT5G01510 RUS5 ROOT UV-B SENSITIVE 5, Protein... Lus10027788
[exp]
8.1 0.8309
AT1G03560 Pentatricopeptide repeat (PPR-... Lus10039799
[exp]
8.8 0.7882
AT5G27540 MIRO1, EMB2473 embryo defective 2473, MIRO-re... Lus10031508
[exp]
10.5 0.7784
AT1G25210 AtLpxC5 lipid X C5, UDP-3-O-acyl N-ace... Lus10021282
[exp]
11.0 0.8200
AT3G20650 mRNA capping enzyme family pro... Lus10027333
[exp]
12.0 0.8153
AT5G26040 HDA2 histone deacetylase 2 (.1.2) Lus10024990
[exp]
15.0 0.8217
AT5G24060 Pentatricopeptide repeat (PPR)... Lus10027532
[exp]
17.2 0.8258

Lus10002745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.