Plant FIBer expression Database

Lus10002746 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10002746 pacid=23162050 polypeptide=Lus10002746 locus=Lus10002746.g ID=Lus10002746.BGIv1.0 annot-version=v1.0
ATGACGAAGAGAAGTGTTGATGACGTTTTTGACAAGCTAGCTCGAGAAGAGAGGTACTCTAAGGAACTTCGTCATGAGGTGGAGCGCCTTGAGAGCCAAG
CAGTGCAGGATAAGGAGACAATCGTATCACTTAGTCATCGCTTCATGATAATGAAGAGGAGGGCCAATGACTTTTCTAACAAACTAGCCCGAGAAGAGAG
GCACTCTAAGAAACTCTCTGATGAGGTGGGGTGCCTTGAGAGCCAAGCAACGCAGGACAAGCAAACAATCTCATCACTTGAAGTCTCCGAAGCGAAAGCA
AAGGAAGAGCTGTCTGAGGCAAACAAAACCATCACTCAATTGCAGGAAAAATTGGACAGAGCCAAAGGAGCTGAAACCGAGCTTGATTCCTTACGATCCG
AGCTTACTACCCTGCGATCTAATCTCGACAAAGTTTCGAGGGAAAGGGATACTGCAAAGTCCCAAGTGAAGTATGCATCTGAGTATCGGAAAAAGTTTCT
TGTGGCCTGCAACATAAATCTTGCTTATAACGTTCGGACTGTTATCGCCAGTATTCGCCATCAATCTCGCACCTGGTTTCCTTCAAGGACCTGGCAAAAA
AGGGGAGTACTCAAAGAAGTCGTACGAAGCTTGCATCGCTTCAAGGAAGGAGTTCCAGACTATGATTCGGACACAAATTATGAAGGCGTGAAAAGGCTGT
GGGAGGAAGTTCGCAGGGAGGAGGCTTGCTATATCGAGACTGCGAAAGCAGCAAGACAAGCCGCAAAGTCCATCCACCCCACCAAACTCCCTAGGTCTCA
AGAGAAAAGTGACAAGCGCCCCCTCCGGGTCGAGTCGGATGCAAATAGGGCCTTTGAAACCAGAGGGTTCTCGTGCCTCTAA
AA sequence
>Lus10002746 pacid=23162050 polypeptide=Lus10002746 locus=Lus10002746.g ID=Lus10002746.BGIv1.0 annot-version=v1.0
MTKRSVDDVFDKLAREERYSKELRHEVERLESQAVQDKETIVSLSHRFMIMKRRANDFSNKLAREERHSKKLSDEVGCLESQATQDKQTISSLEVSEAKA
KEELSEANKTITQLQEKLDRAKGAETELDSLRSELTTLRSNLDKVSRERDTAKSQVKYASEYRKKFLVACNINLAYNVRTVIASIRHQSRTWFPSRTWQK
RGVLKEVVRSLHRFKEGVPDYDSDTNYEGVKRLWEEVRREEACYIETAKAARQAAKSIHPTKLPRSQEKSDKRPLRVESDANRAFETRGFSCL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10002746
[exp]
0 1
AT5G46330 FLS2 FLAGELLIN-SENSITIVE 2, Leucine... Lus10023323
[exp]
5.3 0.7338
AT2G28380 DRB2 dsRNA-binding protein 2 (.1) Lus10003362
[exp]
5.5 0.8071
Lus10013898
[exp]
6.4 0.8381
AT3G26880 Plant self-incompatibility pro... Lus10025935
[exp]
6.5 0.7388
AT5G26594 ARR24 response regulator 24 (.1) Lus10005407
[exp]
10.2 0.8322
AT1G71930 NAC VND7, ANAC030 Arabidopsis NAC domain contain... Lus10017915
[exp]
13.7 0.6776
AT4G01410 Late embryogenesis abundant (L... Lus10012605
[exp]
14.0 0.7614
AT5G52020 AP2_ERF Integrase-type DNA-binding sup... Lus10017830
[exp]
18.5 0.6949
AT5G58430 ATEXO70B1 exocyst subunit exo70 family p... Lus10011859
[exp]
20.0 0.7038
AT3G48360 ATBT2, BT2 BTB and TAZ domain protein 2 (... Lus10013670
[exp]
21.1 0.7414

Lus10002746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.