Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02850 306 / 8e-101 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084200 [exp] 369 / 8e-126 AT5G02850 281 / 2e-91 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10018 [flax] [poplar] Med4 Vitamin-D-receptor interacting Mediator subunit 4
Representative CDS sequence Show only first row Show all	>Lus10002749 pacid=23162052 polypeptide=Lus10002749 locus=Lus10002749.g ID=Lus10002749.BGIv1.0 annot-version=v1.0 ATGCTCCAACATCAAATCGTGCAATCGCCGGCGAGGCTTGGCCTCACGAACCCTAATTCACCGTCTCTTCCCAATTCAACTCCCCCCAAATTCCCTTCCT CCGCTCCCCAATCCCACCACCACCCATCTTCAAATGCCGCAGCCGCCGCGCCTTCCAACTCCGTCACAAGGACCTCCTCTTCCTCCTCCGCTCTCATCTC CCTCCTCCCTCCTCTACCAAGAGCTCAATCCCTGCTCCTTCAGATGGCGTCCTTAGTTTCCAAACTTTTCGAAGTTTCTCCCAATCGCACCCACTGGCTC ACCGCCTTCCGCGGCAACTTCCCGACGTTCCTCGCCTCGCAGGTCCAATCCGCGCCGCCGCTCGAGTCCTCGCCTTCCTCCGTCAAGGAGATCCTGACGG CGTTCAACTCTCTCCAAACGCAGCTCTTCGAAGCCGTTGCCGAGTTGCAAGAAATCCTCGATTTACAAGATGCGAAGCAGAGGATCGCTAAGGAGATCAA ATCGAGAGACTCTCAGCTTCTTGGCTTCGCCAATAAGCTCAGGGAAGCGGAGCGAGTCCTCGATATCCTCGTCGACGACTACGCCGATTTCCGCCGCGCT AAGAGGACCAAGTTCTCTGAAAACGGCGACAACGAAGATGACGAGGAAGCAGAAGGAGGTAAGAACACTACCGTTGCATCCCAGTTGAAAATGTCAGATA TATTGTCTTATGCTCATAGAATCAGCTACACCACGTTTGCACCGCCGGAATTCGGAGCCGGTCAGGGCCCGCTCCGTGGGGCTTTAGCTCCTGCACCTCA GGATGAGCAGATGAGAGCTTCTCAGCTGTATAATTTTGCTGATCTTGACGTTGGGTTACCGAAAGCCGAAACGAAGGAGAAAGCTGTGGAGGCGATTATC GAGCCTCCTCCACCGGCACTGGATGCCCTGGCTGGATTGCTTCCAAACATTACTGTTCCATCTGGATGGAAGCCAGGGATGCCTGTGCATTTGCCTGTGG ATTTGCCTGTGGATTTGCCTGTGCCACCACCTGGATGGAAGCCTGGTGACCCTGTTCATATGGACTCTATTCCTGTGCCTAGGATAGTGGAGCAACATGC CCCTCGAGGATTGCATAAACAATCAGAGTCCATACAAGTTAGACATGTCCAGATTGATATTCTTGATCAGGATGAAGACAGCACTGATTACAGCAGTGAC AGTGACGATGGTAGCTCGGACGATGAAGATTGA
AA sequence Show only first row Show all	>Lus10002749 pacid=23162052 polypeptide=Lus10002749 locus=Lus10002749.g ID=Lus10002749.BGIv1.0 annot-version=v1.0 MLQHQIVQSPARLGLTNPNSPSLPNSTPPKFPSSAPQSHHHPSSNAAAAAPSNSVTRTSSSSSALISLLPPLPRAQSLLLQMASLVSKLFEVSPNRTHWL TAFRGNFPTFLASQVQSAPPLESSPSSVKEILTAFNSLQTQLFEAVAELQEILDLQDAKQRIAKEIKSRDSQLLGFANKLREAERVLDILVDDYADFRRA KRTKFSENGDNEDDEEAEGGKNTTVASQLKMSDILSYAHRISYTTFAPPEFGAGQGPLRGALAPAPQDEQMRASQLYNFADLDVGLPKAETKEKAVEAII EPPPPALDALAGLLPNITVPSGWKPGMPVHLPVDLPVDLPVPPPGWKPGDPVHMDSIPVPRIVEQHAPRGLHKQSESIQVRHVQIDILDQDEDSTDYSSD SDDGSSDDED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02850			hydroxyproline-rich glycoprote...		Lus10002749 [exp]	0	1
AT3G19120			PIF / Ping-Pong family of plan...		Lus10025271 [exp]	2.8	0.8604
AT3G49910			Translation protein SH3-like f...		Lus10011540 [exp]	3.3	0.8821
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	5.2	0.8648
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10037533 [exp]	8.1	0.8589
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	8.2	0.8665
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	12.0	0.8305
AT3G21400			unknown protein		Lus10006520 [exp]	14.7	0.8254
AT2G40290			Eukaryotic translation initiat...		Lus10007521 [exp]	15.2	0.8338
AT4G29870			Oligosaccharyltransferase comp...		Lus10003228 [exp]	15.7	0.8458
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10017323 [exp]	17.9	0.8105

Compare expression of checked genes

Lus10002749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.