Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57040 200 / 2e-64 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT2G41310 191 / 4e-61 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT1G59940 167 / 2e-51 ARR3 response regulator 3 (.1) AT1G10470 165 / 2e-50 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT3G48100 160 / 2e-49 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) AT1G19050 156 / 1e-47 ARR7 response regulator 7 (.1) AT1G74890 156 / 2e-47 ARR15 response regulator 15 (.1) AT5G62920 154 / 4e-47 ARR6 response regulator 6 (.1) AT3G56380 152 / 7e-47 ARR17 response regulator 17 (.1) AT2G40670 149 / 2e-45 ARR16 response regulator 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016334 [exp] 289 / 3e-99 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10039524 [exp] 229 / 6e-76 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10004243 [exp] 167 / 9e-52 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10042153 [exp] 162 / 6e-50 AT3G48100 213 / 1e-70 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10030822 [exp] 163 / 2e-49 AT1G59940 201 / 2e-64 response regulator 3 (.1) Lus10030664 [exp] 163 / 2e-49 AT1G10470 206 / 2e-65 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10029211 [exp] 162 / 4e-49 AT1G10470 211 / 4e-68 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10042938 [exp] 115 / 1e-31 AT1G19050 153 / 7e-47 response regulator 7 (.1) Lus10007885 [exp] 114 / 3e-31 AT2G41310 143 / 1e-42 RESPONSE REGULATOR 8, response regulator 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G197466 [exp] 219 / 2e-72 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.T124806 [exp] 219 / 2e-72 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.001G027000 [exp] 211 / 2e-69 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.016G038000 [exp] 202 / 2e-65 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.006G041100 [exp] 201 / 7e-65 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.002G082200 [exp] 169 / 2e-52 AT3G57040 180 / 1e-56 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.010G037800 [exp] 161 / 4e-49 AT1G59940 202 / 5e-65 response regulator 3 (.1) Potri.019G058900 [exp] 158 / 4e-49 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.015G070000 [exp] 159 / 9e-49 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Potri.019G133600 [exp] 153 / 4e-47 AT3G56380 183 / 2e-60 response regulator 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10002750 pacid=23162054 polypeptide=Lus10002750 locus=Lus10002750.g ID=Lus10002750.BGIv1.0 annot-version=v1.0 ATGGCTATGGCTGTTGCTCAACCTCATCCTGTTCATCACCCCCACAACCACCATAAGTTCCATGTTCTTGCTGTTGATGACAGCATCATTGACAGAAAGT TGATTGAGAGGCTCCTCAAGACCTCTTCCTATCAAGTGACAGCAGTTGATTCAGGGAGTAAAGCCCTGGAGTTTCTTGGCCTCAAGAACAACAACACTAG TGATCATCATGATGATGATGACGAACAAGAACAATTTATGGAGATGGATGATTCATCTAATTCTGCCTCTAATCATGATCTTGATCCTGAAGTTAATCTC ATCATTACTGATTACTGCATGCCTGGAATGACTGGCTATGACCTCCTCAGAAAGATCAAGGAATCCAAAACATTCAAGGACATACCAGTTGTGATCATGT CTTCAGAGAATGTACCATCCAGGATCAATAGGTGCTTGGAAGAAGGAGCTGAGGAGTTCTTTCTGAAGCCAGTTCAGTTGTCAGATGTGAACAAACTGAA ACCACATCTGTTGAGGAAGGGATCATCAAGATCCAGCAGTAATGAAGATGAAGATTTTGAGGATGAGATGATCAAAACCAGTTACAGTAACACTTCTTCT AACAACAAGAGAAAAGAGGAGGAAAAAGAAGAAGAGGAAGAAGAAGAAATTCAATCACCAGACAAGTCAAGAACCAAGTACAATATCCAGCTTCCAACTT CAATGAAACAATAA
AA sequence Show only first row Show all	>Lus10002750 pacid=23162054 polypeptide=Lus10002750 locus=Lus10002750.g ID=Lus10002750.BGIv1.0 annot-version=v1.0 MAMAVAQPHPVHHPHNHHKFHVLAVDDSIIDRKLIERLLKTSSYQVTAVDSGSKALEFLGLKNNNTSDHHDDDDEQEQFMEMDDSSNSASNHDLDPEVNL IITDYCMPGMTGYDLLRKIKESKTFKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVNKLKPHLLRKGSSRSSSNEDEDFEDEMIKTSYSNTSS NNKRKEEEKEEEEEEEIQSPDKSRTKYNIQLPTSMKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10002750 [exp]	0	1
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10016334 [exp]	1.0	0.9607
AT3G19340			Protein of unknown function (D...		Lus10012581 [exp]	3.6	0.9000
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Lus10037895 [exp]	4.5	0.9315
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024174 [exp]	4.7	0.9096
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	7.5	0.9126
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	9.2	0.9238
AT2G20080			unknown protein		Lus10012982 [exp]	11.7	0.9122
					Lus10007012 [exp]	12.2	0.8949
AT1G28350			Nucleotidylyl transferase supe...		Lus10009938 [exp]	12.6	0.8792
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	13.0	0.9148

Compare expression of checked genes

Lus10002750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.