Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19420 897 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 863 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 688 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 687 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 610 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 559 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 556 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 495 / 2e-161 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 466 / 9e-150 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 176 / 1e-47 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016335 [exp] 1519 / 0 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 1132 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 1033 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 913 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 910 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10018904 [exp] 697 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 697 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 662 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 587 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G026900 [exp] 1018 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 1018 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 1018 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 935 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 866 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.002G070300 [exp] 724 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 716 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 624 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G080900 [exp] 517 / 2e-168 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G139600 [exp] 510 / 1e-165 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10002751 pacid=23162046 polypeptide=Lus10002751 locus=Lus10002751.g ID=Lus10002751.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGCTGATCGGACCTTATCGTCATCCGGTAGCTCGGATGGGAAAAATGGGCGTATCAACGGTACAAATGCAGATGCTTTTAGAGTGAGCT TATCAAGTACCGTCAGTTCATCAAGCCAGGGTTCTGGTCATGATGATAGTGACACTATAGGTGATGTATATATGTGGGGAGAAGGCACCGGGGATGGTAT TTTGGGTGGAGGTGTGCACAGAGTTGGAGCTTCTGGTCTGGCTATGGATTCTTTTCTGCCGAGACCCTTAGAATCTGCGTTCATATGGGATGTTCAAGCT ATAGCTTGTGGTCGGCTGCATGCTGCTTTCGTGACAAAACAAGGATCAGTTTTCACTTGGGGTGAAGAACTTGGAGGTAGGCTTGGACATGGTATCGATT CCAATGTCTTGCATCCTAAACCTTTAGATGGGCTTAAAAACATCAATGCTGAAATTGTTGCTTGTGGAGAGTACCATTCTTGCGCCGTATCTCTTTCTGG TGATTTATATATTTGGGGTAATAGTCAATGGCTGCCAAAAAAATTAAACGGGCCACTGGAGGGGATCCCTGTCTCGTCGGTATCATGTGGACCTTGGCAC ACTGCTGTTGTAACTTCAGCTGGTCAATTGTTCACTTTTGGAGATGGAACTTTTGGAGTTTTAGGACATGGTGACCGTGATAGTGTGTCAATGCCAAGAG AGGTGGAGTCGCTTAAGGGCCTTCGTACTATGCGGGTAGCTTGTGGTGTATGGCATACTGCAGCGATTGTTGAAGTAATAGTTGGATCTTCCAATACAAC CAGTTGTTCAGGAAAGCTATTTACGTGGGGAGATGGTGATAAAGGTCGTCTAGGCCACGGTAATATGGTAACAAAACTAGTACCTACTTGTGTCTCTGCT CTTGGTGATTCTAACTTCTGCCGAGTTGCCTGTGGACACAGCATGACCGTTGGGCTTACAACTAAAGGGCATGTTTACACGATGGGAAGCTCTGTATATG GTCAGCTCGGCAATCCTCAAGCTAGCAGTGAGGTGCCAACTCGTGTAGGGGGGAAGCTTGCAAATAATTTTGTCGAGGATCTGGCTTGTGGTGCCTTTCA TGTGGCTGTTTTAACTTCCAAGTCCGAGGTTTATACTTGGGGAAAAGGTGCAAATGGTCGATTGGGTCATGGTGATGCTGATGATAGAAGTTCTCCGACA TTGGTTGAAGCTTTGAAAGATAAACAAGTCAAAAGTATTGTCTGTGGCACAAGTTTGACAGCAGCTATATGTCTTCACAAGTCAGCATCTAGTGATCAAT CAATGTGCTCTGGCTGCCGTTTACCTTTTAATTTCAAAAGGAAACGGCACAATTGCTATAATTGTGGGCTTGTCTTTTGCCATTCATGCAGCAGTAAAAA GTCTATAAACGCTGTCATGGCATCGAATCTGAACAAAGCTTGTCGAGTATGTGACCATTGTTTTCAGAAGCTTAGAAAGGCTGAAACTGTGTCGTCATCA AGTCAGTCTAGTCAAAGTAGAAGAGTTACTGGCCAAGGAAGAAATGAAGCTTTTGAGAGAAGTGAAAATGTGGCTTTGAAACCACAGATCCGTATCGGAA GGAGATTTTCTCTCCAGTCGTCATCTATAGACGTGGACAGTGGATATACAAAGAGAAACAAGAAATTGAATTCCATTAGTACCCAAGTTTCCCCCACGGC AGCTGATTTTAAGCACAACCCATTTCACAACTCCAAGTCGATTGGATCATCTAAGAAATTTTTCTCCGCTTCAGTTCCTGGGTCAAGAATGATGTCACGT GCAACATCACCGACGACATCGAGGCGTTCCAGTCCACCTCGTGCCACAACACCTTCTCCAATTTTGGCGTCACATACAGTGCTAAGGACTGGTGTGGATG AGGCCTTCAAGATTCGTGATGGCTTGAGCAAAGAAGTTGTTAAATTAAGAGCTCAGGTTGAAGAGCTCACTCGGAAAACTCGGATTCAGGAGGTCGAATT GCAAAGGGTAACTGGACAGTTGAAGGAAGCTATTGCTTTAGCGGATGAGGAGATTGCAAAGTCCAGAGCAGCCAAGGAAGTGATTAAATCGCTTACTGCC CAATTGAAGGATGTAGCTGAAAGACTACCTGTTGGAGCAGCAAGAAGCATCAATCCACCAAGTTCCCGTAGCATCGGCACTAGTCCTTTCGAAACTTTCG GCCAACTGAGGTATCTCACAGACGCAAACGAACCAGATTCAAATGGTTCGGAGAGCAGTCTGATCTCCCAACGGTCAGGTAACTCTATCGGCCGAATGTC AAGCATTTGTGAGTTAGTGAATGGGGAATTGGGTACCAGGAGCAAGAACAGAACCGCAAAAGTCGAACCCTGCCATAGAGATGAATGGGTGGAGCAAGAC GAAGCAGGTGTCTATATCACCTTAGTCTCATTGCCCACAGGAGCCAAAGACCTCAAGCGAGTCCGGTTCAGTCGAAAGCGGTTTAGCGAGAAGCAAGCGG GACAGTGGTGGGCAGCAAACAAGGAGAGAGTGTATCAACAGTACAACGTCCCGATGGAGGAGAATTCCGTGGTCAGCATGGGAAAAGAAGGCTTAGCTTG TTAG
AA sequence Show only first row Show all	>Lus10002751 pacid=23162046 polypeptide=Lus10002751 locus=Lus10002751.g ID=Lus10002751.BGIv1.0 annot-version=v1.0 MAAAADRTLSSSGSSDGKNGRINGTNADAFRVSLSSTVSSSSQGSGHDDSDTIGDVYMWGEGTGDGILGGGVHRVGASGLAMDSFLPRPLESAFIWDVQA IACGRLHAAFVTKQGSVFTWGEELGGRLGHGIDSNVLHPKPLDGLKNINAEIVACGEYHSCAVSLSGDLYIWGNSQWLPKKLNGPLEGIPVSSVSCGPWH TAVVTSAGQLFTFGDGTFGVLGHGDRDSVSMPREVESLKGLRTMRVACGVWHTAAIVEVIVGSSNTTSCSGKLFTWGDGDKGRLGHGNMVTKLVPTCVSA LGDSNFCRVACGHSMTVGLTTKGHVYTMGSSVYGQLGNPQASSEVPTRVGGKLANNFVEDLACGAFHVAVLTSKSEVYTWGKGANGRLGHGDADDRSSPT LVEALKDKQVKSIVCGTSLTAAICLHKSASSDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSINAVMASNLNKACRVCDHCFQKLRKAETVSSS SQSSQSRRVTGQGRNEAFERSENVALKPQIRIGRRFSLQSSSIDVDSGYTKRNKKLNSISTQVSPTAADFKHNPFHNSKSIGSSKKFFSASVPGSRMMSR ATSPTTSRRSSPPRATTPSPILASHTVLRTGVDEAFKIRDGLSKEVVKLRAQVEELTRKTRIQEVELQRVTGQLKEAIALADEEIAKSRAAKEVIKSLTA QLKDVAERLPVGAARSINPPSSRSIGTSPFETFGQLRYLTDANEPDSNGSESSLISQRSGNSIGRMSSICELVNGELGTRSKNRTAKVEPCHRDEWVEQD EAGVYITLVSLPTGAKDLKRVRFSRKRFSEKQAGQWWAANKERVYQQYNVPMEENSVVSMGKEGLAC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19420			Regulator of chromosome conden...		Lus10002751 [exp]	0	1
AT4G27500		PPI1	proton pump interactor 1 (.1)		Lus10041932 [exp]	9.5	0.7647
AT3G58050			unknown protein		Lus10016244 [exp]	14.6	0.7785
AT5G54830			DOMON domain-containing protei...		Lus10034323 [exp]	21.4	0.7689
AT3G58050			unknown protein		Lus10017239 [exp]	37.7	0.7421
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	38.2	0.7478
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10022947 [exp]	44.0	0.7261
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	44.2	0.7417
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Lus10000065 [exp]	45.0	0.7413
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10010071 [exp]	49.5	0.7280
AT3G56590			hydroxyproline-rich glycoprote...		Lus10001613 [exp]	53.9	0.7323

Compare expression of checked genes

Lus10002751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.