Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11010 79 / 2e-16 AtRLP34 receptor like protein 34 (.1) AT2G34930 76 / 2e-15 disease resistance family protein / LRR family protein (.1) AT3G47570 74 / 1e-14 Leucine-rich repeat protein kinase family protein (.1) AT3G05660 73 / 2e-14 AtRLP33 receptor like protein 33 (.1) AT5G44700 73 / 3e-14 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G74180 71 / 1e-13 AtRLP14 receptor like protein 14 (.1) AT1G71400 71 / 2e-13 AtRLP12 receptor like protein 12 (.1) AT1G58190 70 / 3e-13 AtRLP9 receptor like protein 9 (.1.2) AT3G28890 70 / 3e-13 AtRLP43 receptor like protein 43 (.1.2) AT4G20140 68 / 2e-12 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002755 [exp] 213 / 7e-63 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 212 / 2e-62 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 210 / 6e-62 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 204 / 8e-60 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 199 / 6e-58 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10001034 [exp] 184 / 5e-53 AT2G34930 360 / 1e-110 disease resistance family protein / LRR family protein (.1) Lus10000220 [exp] 178 / 9e-52 AT2G34930 312 / 1e-95 disease resistance family protein / LRR family protein (.1) Lus10000236 [exp] 177 / 3e-51 AT2G34930 328 / 2e-101 disease resistance family protein / LRR family protein (.1) Lus10016344 [exp] 177 / 3e-50 AT2G34930 399 / 1e-124 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 103 / 1e-24 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 93 / 4e-21 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 92 / 8e-21 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 87 / 5e-19 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 82 / 2e-17 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 82 / 3e-17 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.003G196766 [exp] 81 / 5e-17 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 78 / 4e-16 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 78 / 5e-16 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 77 / 2e-15 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002752 pacid=23162048 polypeptide=Lus10002752 locus=Lus10002752.g ID=Lus10002752.BGIv1.0 annot-version=v1.0 ATGGGTTTTTCTTCTTGGGTTAATGGCAGCACGGATTGCTGCAAATGGCCTGGTGTTGTATGTGGCGGCAAAGTTACTGGCCACGTCACGCAGCTTCGCC TCCAGTGTCCTGGTCTTTGTTCCCAGAAATCTAAGCTCAAGGAACTTGGTATCAGAGCTAGTAGAGATGACTATGTGCTATATGCTGATAGTTTGCAGTG GCTTTCTGGTATGTCTGCACTGGAATACCTTGCTCTAAGTGGTGTTAATCTTACATTTGAAGGAGGGGATGCCAGCGTCATTCAGAAGCTTTTGCCAGTT GGCCTCACTGAAACTTTGACTGATCAGATTGGCAAGTCCAAGAGGCTAAACCATCTTGCTCTCGATGACAACTCCATATCTGGTCCACTCCCGATGTCAT TTGGGGAACTGACATCATTGTATTATGTCAACCTTGCAACTGACCAGATTAATGGGACTATTCCAACAAGTTTTGGGAGACTTGAAGAGCTTGAAATTGT TGACATTTCTCATAACTTAATGGAAGGTATTGTTTTGTCCGAAATTCACTTTGCTAATCTCACAAGCTTGTTTAGATTCGAAGCAGCTGGAAACCAAATT GTGTTCGAAGCTAAATCTGATTGGGTTCCTCCGAAGAAACTCACGATATTGGACTTGAGTTCATGGTACATTGGACCTGGCTTTCCGAAATGGCTCCTCC AATCAAGTCAACATCTCAGATCACTGGGGCTCACGAGCAGTGTTCTCCTACCGCAATCTTTCTCACAATCAGATCTCAGGAATGCTTCCAAGTTATATCT TTGTTATTCCCTCCGACTCTATGTTTGA
AA sequence Show only first row Show all	>Lus10002752 pacid=23162048 polypeptide=Lus10002752 locus=Lus10002752.g ID=Lus10002752.BGIv1.0 annot-version=v1.0 MGFSSWVNGSTDCCKWPGVVCGGKVTGHVTQLRLQCPGLCSQKSKLKELGIRASRDDYVLYADSLQWLSGMSALEYLALSGVNLTFEGGDASVIQKLLPV GLTETLTDQIGKSKRLNHLALDDNSISGPLPMSFGELTSLYYVNLATDQINGTIPTSFGRLEELEIVDISHNLMEGIVLSEIHFANLTSLFRFEAAGNQI VFEAKSDWVPPKKLTILDLSSWYIGPGFPKWLLQSSQHLRSLGLTSSVLLPQSFSQSDLRNASKLYLCYSLRLYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10002752 [exp]	0	1
					Lus10002077 [exp]	3.5	0.5496
AT1G17930			Aminotransferase-like, plant m...		Lus10004818 [exp]	5.9	0.6225
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043267 [exp]	30.3	0.5492
AT3G49290		ABIL2	ABL interactor-like protein 2 ...		Lus10032421 [exp]	40.7	0.5319
AT3G50120			Plant protein of unknown funct...		Lus10018320 [exp]	54.6	0.5003
AT5G36930			Disease resistance protein (TI...		Lus10008415 [exp]	59.2	0.4806
AT4G04650			RNA-directed DNA polymerase (r...		Lus10008147 [exp]	66.5	0.5044
AT5G43370		PHT1;2, APT1, P...	ARABIDOPSIS PHOSPHATE TRANSPOR...		Lus10027631 [exp]	77.8	0.4874
AT1G19835			Plant protein of unknown funct...		Lus10033813 [exp]	89.9	0.4587
AT3G22060			Receptor-like protein kinase-r...		Lus10022286 [exp]	91.7	0.4771

Compare expression of checked genes

Lus10002752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.