Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 368 / 8e-113 disease resistance family protein / LRR family protein (.1) AT1G71400 276 / 2e-79 AtRLP12 receptor like protein 12 (.1) AT5G44700 274 / 6e-77 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G05660 258 / 6e-73 AtRLP33 receptor like protein 33 (.1) AT4G36180 260 / 2e-72 Leucine-rich receptor-like protein kinase family protein (.1) AT3G11080 254 / 4e-71 AtRLP35 receptor like protein 35 (.1) AT2G32680 252 / 1e-70 AtRLP23 receptor like protein 23 (.1) AT3G11010 249 / 7e-70 AtRLP34 receptor like protein 34 (.1) AT4G20140 251 / 3e-69 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33050 246 / 5e-69 AtRLP26 receptor like protein 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016337 [exp] 1296 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016338 [exp] 1225 / 0 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1183 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1181 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1176 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 1165 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1096 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 1085 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1059 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 481 / 6e-154 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.003G196766 [exp] 464 / 1e-153 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 454 / 3e-144 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 452 / 2e-143 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 451 / 2e-143 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 451 / 3e-143 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 448 / 2e-142 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 446 / 2e-141 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 437 / 6e-137 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 433 / 9e-135 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10002753 pacid=23162045 polypeptide=Lus10002753 locus=Lus10002753.g ID=Lus10002753.BGIv1.0 annot-version=v1.0 ATGATCGATGGTGGTGCTTTAGTGGAGAACAACGACGTGGGTGGTGGTGGTAGTGGTACTTTCGCCGAAAACATCAACGTGAGTGATGGTGCTCCCGCTG CCATCGATCAGAAAGAGAAGCCCTTTTGCAATTCAAGGCTGATTTACAAGACCCTTCAAGCAAATTATCTTCTTGGGTTAATGGCAGTACAGATTGTTGC AAATGGCGTGGCGTTGTATGTGACAACGTTACTGGCCATGTCACACAGCTTCGCCTCAATTGTCCTTATCTTTGTCTCCAGGACTCTATGCTCAGAGTGG TCTGGATTTGGGGGAGTCATTCCTCACCAACTTGGAAACCTCTCAAATTTAGTAGAACTTGGTATCAGAGCTAGTAGAGATGACTATGTGCTATATGCTG ATAGTTTGCAGTGGCTTTCTGGTCTGCCTGCGTTGGAATACCTTGCTCTTAGTGGTGTTAATCTTAGCACAGCTTCTGATTGGCTGGACATGGTAAATAC TGTTCCGTCTCTTTCAGAATTATATCTATCAGATTGTCAAATCAGTGGCGGCTTTCCTTTAGTACATGTCAACCTATCGTCGTTGTCCGTTCTTGATCTG CATTTGAATAGTTTCGGTCCAACGTCATTTCTGAGATGGGTTTCTCATCTGAAAAGACTGACTTCATTGGATCTTCGAACGACAAACCTCCGAGGTCCAG TTCCTGACGAGCTTCGGAACCTTACCTCTCTTAGAGCTCTGGAACTATCTTGGAACAAATTCAATGGTTCAATACCAAATTGGCTGTTCAGTTTTCTTCA CCTTGAGGACCTGTATATTCAACAAAGCAACCTGACTGGTGATGTACCAATTGGAATTGGGAACTTGACCTCTCTTATGAATCTGGACTTGTCATTCAAT CACGGACTTAAATTTGAAGGAGGGATTCCAGCATCATTCAGAAGTTTTTTCCAGTTGACATCACTGGAACTGTCATATGTAAAGCTGAAACAAAATGTAT CAGAGGTACTTCAAATATTGGGAGAGTGTTCTTCTAGCACGCTAGAGAGATTGTATTTGGATCACTGTCAACTATTTGGTAAATTGACCGATGGGATTGG TAAATTCAAGCGACTAAAGCATCTTGTGCTCAACGACAACTACATAACTGGTCCACTTCCGATGTCATTCGGAAAACTAGCATCCTTGAATTATGCAATT CTTGCAAGAAACCGGATTAAGGGGACTATTCCAGCCAGTTTTGGGGGACTCTCAGAGCTTGAAGTTGCTGACATTTCTCATAACTCAATGGGTGGTATTG TTTCCTCCGAAATTCACTTTGCCAACCTCACAAAGTTATTTAATTTCCAAGCAGCTGGAAACCAAATTATATTCAAAGCTAAACCAGATTGGGTTGCTCC CAAGCGACTTCTAACATTGGACTTGAGTTCATGGTACGTTGGACCTGGCTTTCCGAAATGGCTCCAATCAATTCAGTATCTGAAATCACTTGATCTGTCC AACTCTGGCATTGCAGAACCGATTCCTGATTGGTTCTGGGGCTCACACCCAGTGGTTTACTACCTCAATCTTTCTCACAACCAGATACCAGGAATGCTTC CTAGTTATATCTCTGTTATTTCCGCCGATTCAATGTATGACTTCAGCTGGAATAACTTGGAGGGCCCACTACCAGTCATTTCGCTGAATTTGACTGCATT GGACCTTTCCAATAATTTTGTCTCTGGAAATTTGTTCAAGTTCTTGTGCTCCAATCCAGCTCAGTTGAGGGACACACAGTTTCTCAATCTTCAAGAGAAC TTTTTGTATGGGGAGATACCAGATTGTTGGAAGAGTTGGGGGAACTTGAAGGTTGTAAGACTTGGCAACAATGATTTGAGAGGAAACATTCCTAATTCCA TTGGAACCTTAAGCTCTCTTCTGTCTTTGCGTATTCAGAACAACAGCCTGACTGGTGAAATCCCTTTGTCCCTCGGCAACTGCTCGAGTCTTGTCTCCGT CGACTTAAGTGACAATGGATTTGAAGGGAGCATTCCAAAGTGGATTGGGGAAAGACTTACAATGCTGTCCATCCTTACTCTACGCCGGAATAAGTTCTCG GGGGTTGTTCCTGAGGAGCTTTGCCATCTGCAGCTTCTCCAAATCTTGGACCTTTCTCACAACTTTCTATATGGGAACTTGCCAGAATGTGTAACTAATT TCAGCGCCATGGCCAACTCAAATAATGAGGATCAAGGAGTAATTTACCTTTTCTTTGGCGGGGCGAAATCATTTGTGGAATACCAGGTCCTTGTGGCACA AGGGCAGGTTAAGGCTTACAGCACCATATTGAATTATGTCAGAAGTTTGGATCTTTCCTGGAATAACTTTTCAGGTGAAATTCCAAAGCAGATAACAAGC CTTGTGGCCTTGAAATACCTTAACCTATCGCGTAATTTGCTGTCCGGTGCAATCCCAGAAAGTTTAGATGCCATGGAGTCTTTGGAATCTTTGGACTTGT CGGCAAACCAACTATTTGGCGAAATCCCAGCGAGCATGGCAAGTCTGACATTCTTGAATCACTTGAATTTGTCGTACAACAAGTTGAGTGGGAGAATTCC TTCAAGCACTCAACTGCAGAGCTTTGACTTGTCTAGCTTCATCGGCAACTCAGGACTATGCGGCTCTCCGTTGACTGTGAACTGCAGCAGAAAGGACACT GTGCCTGGTTCTGGTAAAGAGCGCAAAGAATATGATCGGTACTGGTTCCCTCTCAGTGTAGTGCTTGGATTTGTGGTAGGGTTTTGGAGCATTGTTGGTA CCGTAGCAGTCAACCAACAATGGTTCACATAG
AA sequence Show only first row Show all	>Lus10002753 pacid=23162045 polypeptide=Lus10002753 locus=Lus10002753.g ID=Lus10002753.BGIv1.0 annot-version=v1.0 MIDGGALVENNDVGGGGSGTFAENINVSDGAPAAIDQKEKPFCNSRLIYKTLQANYLLGLMAVQIVANGVALYVTTLLAMSHSFASIVLIFVSRTLCSEW SGFGGVIPHQLGNLSNLVELGIRASRDDYVLYADSLQWLSGLPALEYLALSGVNLSTASDWLDMVNTVPSLSELYLSDCQISGGFPLVHVNLSSLSVLDL HLNSFGPTSFLRWVSHLKRLTSLDLRTTNLRGPVPDELRNLTSLRALELSWNKFNGSIPNWLFSFLHLEDLYIQQSNLTGDVPIGIGNLTSLMNLDLSFN HGLKFEGGIPASFRSFFQLTSLELSYVKLKQNVSEVLQILGECSSSTLERLYLDHCQLFGKLTDGIGKFKRLKHLVLNDNYITGPLPMSFGKLASLNYAI LARNRIKGTIPASFGGLSELEVADISHNSMGGIVSSEIHFANLTKLFNFQAAGNQIIFKAKPDWVAPKRLLTLDLSSWYVGPGFPKWLQSIQYLKSLDLS NSGIAEPIPDWFWGSHPVVYYLNLSHNQIPGMLPSYISVISADSMYDFSWNNLEGPLPVISLNLTALDLSNNFVSGNLFKFLCSNPAQLRDTQFLNLQEN FLYGEIPDCWKSWGNLKVVRLGNNDLRGNIPNSIGTLSSLLSLRIQNNSLTGEIPLSLGNCSSLVSVDLSDNGFEGSIPKWIGERLTMLSILTLRRNKFS GVVPEELCHLQLLQILDLSHNFLYGNLPECVTNFSAMANSNNEDQGVIYLFFGGAKSFVEYQVLVAQGQVKAYSTILNYVRSLDLSWNNFSGEIPKQITS LVALKYLNLSRNLLSGAIPESLDAMESLESLDLSANQLFGEIPASMASLTFLNHLNLSYNKLSGRIPSSTQLQSFDLSSFIGNSGLCGSPLTVNCSRKDT VPGSGKERKEYDRYWFPLSVVLGFVVGFWSIVGTVAVNQQWFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10016338 [exp]	1.4	0.6900
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	2.6	0.7124
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10028636 [exp]	7.3	0.6281
					Lus10022247 [exp]	11.4	0.5893
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	14.3	0.6335
					Lus10039434 [exp]	16.6	0.6284
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	18.5	0.6041
AT2G33710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016245 [exp]	21.4	0.5112
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006450 [exp]	22.3	0.6129
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10018934 [exp]	23.2	0.6297

Compare expression of checked genes

Lus10002753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.