Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 82 / 2e-16 disease resistance family protein / LRR family protein (.1) AT5G40170 74 / 9e-14 AtRLP54 receptor like protein 54 (.1) AT2G33060 73 / 1e-13 AtRLP27 receptor like protein 27 (.1) AT1G17250 73 / 2e-13 AtRLP3 receptor like protein 3 (.1) AT2G33020 68 / 5e-12 AtRLP24 receptor like protein 24 (.1) AT1G17240 68 / 6e-12 AtRLP2 receptor like protein 2 (.1) AT2G33030 65 / 8e-12 AtRLP25 receptor like protein 25 (.1) AT2G32680 67 / 1e-11 AtRLP23 receptor like protein 23 (.1) AT1G74190 66 / 3e-11 AtRLP15 receptor like protein 15 (.1) AT1G72300 66 / 5e-11 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016339 [exp] 377 / 2e-121 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 306 / 1e-94 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 297 / 3e-91 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 292 / 2e-89 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 272 / 1e-81 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10000220 [exp] 249 / 4e-76 AT2G34930 312 / 1e-95 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 256 / 6e-76 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 254 / 1e-75 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10000236 [exp] 243 / 6e-74 AT2G34930 328 / 2e-101 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 144 / 6e-38 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 126 / 5e-31 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 118 / 4e-28 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 115 / 2e-27 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 108 / 3e-25 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 108 / 6e-25 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 105 / 5e-24 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 104 / 9e-24 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 103 / 2e-23 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 100 / 3e-22 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10002754 pacid=23162043 polypeptide=Lus10002754 locus=Lus10002754.g ID=Lus10002754.BGIv1.0 annot-version=v1.0 ATGTTGCAATATTACACCGCTCTCACCGATTTCTGTGGGAACATTCCAAATTGGATTGGGGAAAGGCTATCAAGATTGGCAATCATCAATTTACGTGGCA ACAAGTTCACGGGAGACATTCCTGAGGAGCTTTGCCATCTGCAGCTTCTGCAAATCTTGGACCTTTCTCATAACTATCTATCTGGGAACTTGCCGGAATG TGTAGCTAATTTCAGCGCCATGGCCGATTCAAGTAATCAGGATGACGCAGTAATTTTCCTTTTCGCTGCTGGGGCTAAAACGTTTGTGGAGTACCAGGTC CTCGTGGCGCAAGGGCAGATTACTAGCCTTGCGGCCTTGCACTATCTTAACTTGTCGCACAATTCACTCTCAGGCTCAGTCCCAGCAGATTTAGATGCCA TGACGTCGCTGGAATCTTTGAACATGTCTGAAAATCAACTACTTGGTGCAATTCCGCCGGGAATAGAAACTCTGACATTCTTGAATCACTTGAACTTATC CTACAACAACTTAAGTGGGAGAATCCCTTCAAGCACTCAATTGCAGAGCTTTCACCCATCAAGCTTCATTGGCAACAAGGGACTTTGCGGCTCTCCTTTG AATGTGAGCTGCAGCAGAATGAACTTGGTGCCTGGTTCTGGTGAAGGAAACGGAGACTATGATGTCTACTGGTTCTCTGTCGGCGTAATGTTTGGGTTTG CATTCGGGTTTTGGGGCATAGTTGGTTCACTAGAAGTCAGCGAACTTTGGAGAGTATTGTGTTTTGGTGTCCTGGATCACATTGGGATAAACTCTAGAGC TTTTGATTCGGAAAAGACTTCTGTGCTTCATTCATGTACGAGCCTTGGCTCCTTGCCCTATCTCAACTTGTCGCCCAATTCACTCTCAGGCTCGGTCCCG GGAGATTTAGGTGCCATGACGTCGCTGGAATCTTTGAACATGTCTGAAAATCAACTACTTGGTGCAATTCCGCCGGGAATAGAAACTCTGACATTCTTGA ATCACTTGAACTTATCCTACAACAACTTAAGTGGGAGAATCCCTTCAAGCACTCAATTGCAGAGCTTTCACCCATCAAGCTTCATTGGCAACAAGGGACT TTGCGGCTCTCCGTTGAATATGAGCTGCAGCAGAATGAACTTGGTGCCTGGTTCTGGTGAAGGAAACGGAGACTATGATGTCTACTGGTTCTCTGTCGGC GTAATGTTTGGGTTTGCATTCGGGTTTTGGGGCATAGTTGGTTCACTAGAAGTCAGCGAACTTTGGAGAGTATTGTGTTTTGGTGTCCTGGATCACATTG GGATAAACTCTAGAGCTTTGTAA
AA sequence Show only first row Show all	>Lus10002754 pacid=23162043 polypeptide=Lus10002754 locus=Lus10002754.g ID=Lus10002754.BGIv1.0 annot-version=v1.0 MLQYYTALTDFCGNIPNWIGERLSRLAIINLRGNKFTGDIPEELCHLQLLQILDLSHNYLSGNLPECVANFSAMADSSNQDDAVIFLFAAGAKTFVEYQV LVAQGQITSLAALHYLNLSHNSLSGSVPADLDAMTSLESLNMSENQLLGAIPPGIETLTFLNHLNLSYNNLSGRIPSSTQLQSFHPSSFIGNKGLCGSPL NVSCSRMNLVPGSGEGNGDYDVYWFSVGVMFGFAFGFWGIVGSLEVSELWRVLCFGVLDHIGINSRAFDSEKTSVLHSCTSLGSLPYLNLSPNSLSGSVP GDLGAMTSLESLNMSENQLLGAIPPGIETLTFLNHLNLSYNNLSGRIPSSTQLQSFHPSSFIGNKGLCGSPLNMSCSRMNLVPGSGEGNGDYDVYWFSVG VMFGFAFGFWGIVGSLEVSELWRVLCFGVLDHIGINSRAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08590			Leucine-rich receptor-like pro...		Lus10002754 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	4.4	0.8539
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	6.2	0.8539
					Lus10010383 [exp]	7.5	0.8539
					Lus10000380 [exp]	8.7	0.8539
AT5G05390		LAC12	laccase 12 (.1)		Lus10040957 [exp]	9.5	0.7710
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	9.7	0.8529
					Lus10009632 [exp]	10.7	0.8504
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10024449 [exp]	11.5	0.8380
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	13.0	0.8357
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	14.4	0.8330

Compare expression of checked genes

Lus10002754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.