Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 401 / 1e-124 disease resistance family protein / LRR family protein (.1) AT4G13920 236 / 6e-65 AtRLP50 receptor like protein 50 (.1) AT4G20140 236 / 4e-64 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G15080 231 / 6e-63 AtRLP19 receptor like protein 19 (.1.2) AT1G71400 226 / 7e-62 AtRLP12 receptor like protein 12 (.1) AT3G11080 222 / 7e-60 AtRLP35 receptor like protein 35 (.1) AT3G11010 221 / 8e-60 AtRLP34 receptor like protein 34 (.1) AT5G07280 223 / 9e-60 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G47890 221 / 1e-59 AtRLP7 receptor like protein 7 (.1) AT5G44700 221 / 3e-59 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016341 [exp] 1603 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1451 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1301 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1245 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1187 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1080 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016338 [exp] 1071 / 0 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 1057 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 1051 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 504 / 2e-162 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 503 / 5e-162 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 500 / 3e-161 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 468 / 3e-149 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 466 / 1e-148 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 462 / 3e-147 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 462 / 7e-147 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 451 / 2e-141 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 442 / 8e-139 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 412 / 8e-128 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002755 pacid=23162042 polypeptide=Lus10002755 locus=Lus10002755.g ID=Lus10002755.BGIv1.0 annot-version=v1.0 ATGACTAATCCTGCTCTCTTGCTTCTTGTTTGCATGATTTGGATGCGTTTCTTCTGCTACGGAGCCTGTGGTGTGAGATGCCATCAAGCTGAAAGAGAAG CTCTTTTGACTTTCAAGGCTGATCTCCAAGACCATTCAGGACGGTTATCTTCTTGGGTTAATGGCAGCAAAGATTGCTGCAAATGGTATGGTGTTGTATG TGACGACCTTACTGGCCATGTCACGGAGCTCGACCTCCATTGTCCGGATCTTTGTTTTCATGATTCTAAGCTCAGAGGTAAGATGAATCCTTCCTTACTT GAGTTGAAGCATCTCAGTTACTTGGACCTGTCTGAGAGTGATTTTCAAGGGGTTTCTATTCCGCGGTTTCTTGGGTCGATGACAAGTTTGCAAACACTTT ACCTTGATGGGTCTCGATTCCGGGGACTCATTCCTCATCAACTTGGAAACCTCTCAAACTTGCTACAACTTGGTCTCATGGCTGGTGATGATGGCTATGA TCTATATGCTGATAGTTTGCAGTGGCTTTCTGGTCTCCCATCACTGGAATACCTTGATTTGGATAAGGTTGATCTCAGTAATGCTTCTGATTGGCTGGAC ATGATAAATACAGTCCCCAATCTTGAAAGATTGTATCTATCAGATTGTCAAATCGGTGATGATATTCCTTCAGTCCATGTCAATCTATCATCTTTGTCAG TTCTTGATCTCAGTGCCAATCGATTCGGTGCATCTTCATTTCCTAGCTGGGTCTCGCATCTGGAAAGTCTGACTTCTTTGAATCTCCAAGATTGCAACCT CAGAGGTCCTGTCCCTGAAAGGCTTCGTAACCTTACATCTCTCAAAAATCTTACACTGTCGGACAACAATTTCAATGGTTCCATACCAAGTTGGCTGTTC AGTTTTCGTTACCTTAAACACCTAGATTTTCGCAAAAGCAATTTGGGAGGTGATGTATCAAATGGAATAGGGAACATGACCTCTCTTGTTAATCTGGACT TATCATTCAATTATGGTCTTAAACTTGAAGGAGGTATTCCAGCATCATTCAGAAGCTTTTGCCATTTGAGCTCACTGAAACTGTCATACGTAAAGCTGAA ACAAAGTGTTTCCGAGGTGCTTCAAATTCTTGAAGAGTGTTCTTCTGGCACACTAGAGAGATTGTCCTTGAGTGGTTGTGAACTATTTGGTCAGTTGACT GATCGGATAGGCAAGTTCAAGAGACTAAAACACCTTTGGCTGGATGACAACTCCATATCTGGTCCACTTCCAATGTCATTTGGGGAACTGATATCCTTGA ATTCTGTCAACATCGCAAGAAACCAGATTAATGGGACTATTCCGACAAGTTTTGGGAAACTTGCTGACCTTGAAGTTTCTGACATTTCTCAGAACTTAAT GGAGGGCATTGTTTCTTCCGAAATTCACTTTGCCAATCTCATGAAGTTGACTAGTTTCTATGCAGCTGGCAACCAAATTGTGTTCAAGGCTCAACCAGAT TGGGTTCCTCCCAAGGAGCTCACAGTACTGGACTTGAGTTCATGGTACGTTGGACCTGGCTTTCCCAAATGGCTCCAATCAACTCAGTATATCGCTTCTC TTGATCTGTCAAACACTGGAATTTCAGAACCAATTCCTGATTGGTTCTGGCGCATGAACTATTATATCTACTATCTCAATTTTTCTTACAACCAAATTCC TGGACGACTTCCAAGTTCTGTTCGTTCTCGCTCCTATGACACAATGTTTGACCTCAGCTGGAACCACTTGGAAGGTCCACTGCCAGTTATATCGTCCAAT TTAACTGCATTGGACCTTTCTAATAATTTTTTATCTGGAAACTTGTTCAAGTTTCTGTGCTTGAATCCAGCTCAGTCAAGGGACACAGAGTTCCTCAATC TGCAAGGTAACCTTCTGTCTGAAGAGATACCAGAATGCTGGAGAAGTTGGACGAGCTTGAAGGTTATAAGATTAGGCAGCAACAAGTTGAGAGGGAAAAT TCCGAAGTCCATTGGAGCCTTGAGCTCCCTTCTATCGTTGCATATTCAGAACAACTCCCTGACTGGTGAAATCCCTTTGTCTCTTGGTAACTGCTCCACT CTAGTCTCTATCGACTTAGGTGACAATGAATTGGAAGGGAACATTCCAAAGTGGATTGGGGATAGGCTTTCAAGGCTGGCCATCATAAATTTGCGCGGTA ATAAGTTCACGGGGTGCATTCCTGAGGAGCTTTGCCGTTTGCAGCTTCTGCAAATCTTGGACCTTTCTCATAACTATCTATCTGGGAACTTGTCAGGATG TGTAGCTAATTTCAGCGCCATGGCTGATTCAAATAATGAGGATCCAGGAGTAGTTTATCTTTTCTTCGGCGGGGCGAAAGTATTTGTGGAATACCAGGTT CTCGTGGCGCAAGGCCAGGTTAAGTCTTACAGCACTATACTCAATTACGTCAGAAGTTTGGACCTTTCCTGGAATAACTTGTCAGGAGAGATTCCAAAGC AGATTACAAGCCTTGGGGCCTTGCATTATCTCAACTTGTCGCACAATTCACTCTCAGGCTCAGTCCCAGGAGATTTAGATGCCATGACGTCGCTGGAATC TTTGGACATGTCTGAAAATTATTTATCTGGACCTATCCCACCAGGAATGGCAAGTCTGACATTCTTGAATCACTTGAACCTGTCCTACAACAACTTAAGT GGGAGAATTCCTTCAAGCACTCAACTGCAGAGCTTTGACTTGTCTAGCTTCATCGGCAACTCAGGACTTTGTGGCTCTCCATTGACTGTGAACTGCAGCC GAACTAACTTGGTGCCTGGTTCCGGTGAAGGAAACAGAGACCACAATTTTCAGTGGTTCTCAGTCAGCGTATTGTTTGGGTTTGGGTTTGGGTTTTGGGG CATAGTTGGTTCGCTAGAACTCAGCGAACGATGGAGAGAGTTGTGTTTCGGTGTCTTGGATTGCATTGGGATAAACTCTGGAGCTTTGTGA
AA sequence Show only first row Show all	>Lus10002755 pacid=23162042 polypeptide=Lus10002755 locus=Lus10002755.g ID=Lus10002755.BGIv1.0 annot-version=v1.0 MTNPALLLLVCMIWMRFFCYGACGVRCHQAEREALLTFKADLQDHSGRLSSWVNGSKDCCKWYGVVCDDLTGHVTELDLHCPDLCFHDSKLRGKMNPSLL ELKHLSYLDLSESDFQGVSIPRFLGSMTSLQTLYLDGSRFRGLIPHQLGNLSNLLQLGLMAGDDGYDLYADSLQWLSGLPSLEYLDLDKVDLSNASDWLD MINTVPNLERLYLSDCQIGDDIPSVHVNLSSLSVLDLSANRFGASSFPSWVSHLESLTSLNLQDCNLRGPVPERLRNLTSLKNLTLSDNNFNGSIPSWLF SFRYLKHLDFRKSNLGGDVSNGIGNMTSLVNLDLSFNYGLKLEGGIPASFRSFCHLSSLKLSYVKLKQSVSEVLQILEECSSGTLERLSLSGCELFGQLT DRIGKFKRLKHLWLDDNSISGPLPMSFGELISLNSVNIARNQINGTIPTSFGKLADLEVSDISQNLMEGIVSSEIHFANLMKLTSFYAAGNQIVFKAQPD WVPPKELTVLDLSSWYVGPGFPKWLQSTQYIASLDLSNTGISEPIPDWFWRMNYYIYYLNFSYNQIPGRLPSSVRSRSYDTMFDLSWNHLEGPLPVISSN LTALDLSNNFLSGNLFKFLCLNPAQSRDTEFLNLQGNLLSEEIPECWRSWTSLKVIRLGSNKLRGKIPKSIGALSSLLSLHIQNNSLTGEIPLSLGNCST LVSIDLGDNELEGNIPKWIGDRLSRLAIINLRGNKFTGCIPEELCRLQLLQILDLSHNYLSGNLSGCVANFSAMADSNNEDPGVVYLFFGGAKVFVEYQV LVAQGQVKSYSTILNYVRSLDLSWNNLSGEIPKQITSLGALHYLNLSHNSLSGSVPGDLDAMTSLESLDMSENYLSGPIPPGMASLTFLNHLNLSYNNLS GRIPSSTQLQSFDLSSFIGNSGLCGSPLTVNCSRTNLVPGSGEGNRDHNFQWFSVSVLFGFGFGFWGIVGSLELSERWRELCFGVLDCIGINSGAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10002755 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10018937 [exp]	1.0	0.9325
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10003510 [exp]	3.7	0.8936
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10001691 [exp]	3.9	0.8907
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10021580 [exp]	5.7	0.9110
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	9.4	0.8812
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	11.7	0.9128
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	12.0	0.9010
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	17.7	0.9025
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10027932 [exp]	18.1	0.9011
AT4G02715			unknown protein		Lus10014679 [exp]	18.7	0.8661

Compare expression of checked genes

Lus10002755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.