Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04670 1183 / 0 Met-10+ like family protein / kelch repeat-containing protein (.1) AT1G74150 114 / 3e-26 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 114 / 7e-26 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 87 / 2e-17 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT5G48180 82 / 2e-16 NSP5 nitrile specifier protein 5 (.1) AT5G18590 79 / 1e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G05420 78 / 2e-14 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 77 / 2e-14 ACBP5 acyl-CoA binding protein 5 (.1) AT1G03445 76 / 1e-13 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G50310 75 / 2e-13 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016343 [exp] 1002 / 0 AT4G04670 625 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10017860 [exp] 105 / 2e-23 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031420 [exp] 101 / 8e-22 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10043424 [exp] 88 / 7e-18 AT2G36360 625 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10034159 [exp] 88 / 2e-17 AT2G36360 658 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10010913 [exp] 86 / 6e-17 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015176 [exp] 79 / 8e-15 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 79 / 1e-14 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10034163 [exp] 79 / 1e-14 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G015200 [exp] 1256 / 0 AT4G04670 1162 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Potri.013G008200 [exp] 126 / 9e-30 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G013000 [exp] 119 / 3e-27 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 114 / 6e-26 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 113 / 8e-26 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G024700 [exp] 81 / 2e-15 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.008G214900 [exp] 79 / 1e-14 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G031200 [exp] 78 / 2e-14 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G026900 [exp] 77 / 3e-14 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 75 / 2e-13 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02676 [flax] [poplar] TYW3 Methyltransferase TYW3 CL0063 [flax] [poplar] NADP_Rossmann PF02475 [flax] [poplar] Met_10 Met-10+ like-protein CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10002756 pacid=23162062 polypeptide=Lus10002756 locus=Lus10002756.g ID=Lus10002756.BGIv1.0 annot-version=v1.0 ATGGAGTTCGAGAAGAGAAAGGCGGCAACTTTATCCCTAATTGCCTCGTCGGAAGCCGATAAATCTCCAAAAGGTTTCATAGACGAGCCAATCATCCCAC TTCTCAATCTCCTCAACTCCCATCCATCTTACTTCACCACCAGCTCATGCTCTGGCCGAATCTCCATCCTCTCCCAACCTAAACCCTCTTCCTCCTCCTC CGCCACCACCCCGAAAAAGAAGGCTCGCGGCGGCTCCTGGCTCTTCATCACTCACGACCACCCTGCCGATGCTTCAACAGTCGTCTCCCTCCTTTTCCCG CCGCTGGCGCAGGACTCCTCCACTGTTTCTGATTCGACGGCCCATGAGCTTGTTTTCAGATTCGAGCCTCTCATCATCGCCGTAGAGTGCAGAGACGTCC AATCGGCGCAGTCATTGGTTTCTCTGGCTATTTCCTCCGGGTTCAGAGAATCAGGGATCACCAGCGCCAGTAAGAAGAGGATAATCGTCGGGATTCGATG CTCCATTAGAATGGAGGTTCCGTTGGGCGACAGTGATAACTTGCTGGTGTCCAGGGAGTATGTTGAGTTCTTAGTTGGTGTTGCTAATCAGAAAATGGAA GCCAATTGGCAAAGGACGCAAGGGTTCTTTATGGCTTTGAAGAGAGAAACAGGGTTTGTGGGAGACAACTTGAAAGCGGAGAATGGTGATTGTGATCTTG AAGATAACCAAGTTGGAACAGCTCACCGTATGGAAGAAAATGCTGGGTTGATAGGGGTTCCTGATCAAAGTATATCAGCTATCCGCGTGCCGATTGTTGG AGAATCTGTGGAGAAGCTTTTCCTTTGGGGTCATACTAGCTGTACACTAGGTAATAATATTGTCCCAGGCGGTATTCTGGTATTTGGTGGTTTTGGCGGC AAAGGAAGGCATGCTAGAAGAAATGAATCCTTGCTGCTTGATCCATCTAGGGGCACATTGGAAAATGTCGATGTTGATGCCGCACCATCTTCTCGGTTGG GCCACACAGCTTCCGTAGTTGGTGGCTTGGTTTTCGTCATTGGCGGAAGGACCGATCCTTTGAACATTTTGAATGAAGTTTGGCTTCTCGATGTTGCAAG GAAACAATGGAGGCAGATTGAATGTGGCGGAAGCTGTTTCCCTCCCAGGCATCGACATGCAGCTGGAGTTGTTGGTTCGAAGATATATGTATTGGGTGGT CTGAATAATGACTCGATCCTTTCATCTTTCCATGTCCTCGACACTGTAAACTTACAGTGGAAAGAGGTAGTGGTAGGAGGGGATCAACCATGTGCACGTC ACTCTCACTCAATGGTGGCTCATAAGTCTAAGTTATTTATGTTTGGAGGACACAATGGTGAGCAAGCCCTTGGAGAACTGTACAGTCTTGATGTTGATAC TTGCAAATGGAAAAAGGAAAAGCCGGCCGGAAGAAGTCCAAGTGCAAGGTTCTCGCACTCAATGTTTGTTTATAAGAATTTTATCGGAATAATTGGTGGT TGTCCTGTGAATCAACATTTTCAAGATTTGGCATTACTAGATGTGGAGCATCAGTTATGGAGTCATGTGAGACTCGATTGCATTGGCAAAGAATTGCTTG TACGAAGTACTGCCAGTGTTGTAGATGACAATCTCGTTGTGATTGGTGGTGGAGCAGCTTGTTATGCGTTTGGGACAAAGTTCACTGAACCTTTGACAGT TGATTTGCTTCCTCTTGCTTCTGTGGAAGAAAAGAATGTGTCTATACGTAGTCAACATGTGATTACTTCATATTCGCATGAAGAATTTGTAACCTCCGGC ACTTCAGCCGAAGATGATGGGGATAGTGAACGGCAGTGGGTGTTGCAGCTTAAAAAGAACTATGCGAAACTAGCGAAGGACATGCTGAAGAAATTTGGGT GGTTAGATCTTAGGAGAAAAGTTTACTCATTGGATAATGGACTTCACATTTATTTCCCAATCACTGGAAATTTTTTTGCCAAGTTCACTGAAAATGCGAC ATCTGTAGACCAATTTGATAACCACCTATCTGAAAGGCTAGCAGGAGACAAGTCTCTGTTAAATGATGTTTCATCTTCTGCAGCCTTACGCCTTCTGCAG GAATTCGGCGGGACTAAACTGGCTGACAAGGTTAGTGAAGTCAGAAAGGTTGCAAAATCTCCATCACAAATGATGAAGGAAGCCGTAGCATCCTTGATAA AAAATAAAGGTCTATCACAAGAACTATTAAACGAAATACCAGTTAGGTGGGAGCGTCTCGGAGATATTGTTGTGCTTCCTATTACATCATTCAAGGACCC GCTATGGGATTCAATCAGAGAGGAGCTGTGGCCCATCGTTGCTACATCACTTAATGCCATTCGCCTTGCACGCCAAGGCCGTGTGGCTTCAAATGGAACA AGGGACAGCACATTGGAATTGTTGGTGGGAGACAGTGGCTGGGTTGATCATAGAGAAAACGGAGTTATATATTCTTTTGACGTAACCAAATGCATGTTCT CCTGGGGTAATCTATCTGAAAAGCTTCGTATGGGTAGATTGAACTGTGAAGACGAAGTTGTCTTGGATTTGTTTGCTGGGATTGGCTATTTTTCGTTGCC ATTTCTTGTCAGGGCCAAGGCAAAGCAGGTTTATGCCTGTGAATGGAACCCCAAAGCTGTTGAGGCACTCAAGAGGAATCTGGAGCTTAATTCTGTCTCC GATCGATGTGTTGTATTTGAAGGAGATAATCGGCTTAATGCACCCAAAGAAGTAGCCGATCGAGTTTGTCTAGGTCTTATCCCTACGAGCGAAGGGAGTT GGGAGACGGCAATCAAGGCATTGAAAAAGGAAGGTGGCGTTCTGCATGTGCATGGGAATGTGAAGGACTCCGAGGAGGCTACCTGGACGCAACATGTTGT AACGTCGCTTGATAACATTTCGAAATCAGAAGCTGATCAGGCTGTGTTGCGGTATATTGGGACAGGTCGGAGTTGGGAAGTGGTAGTAGAGCACGTAGAG AGAGTGAAATGGTACGCCCCTCATATACGCCACGTTGTGATAGACGTTAGGTGCCGCCCTATTCCTGCATAG
AA sequence Show only first row Show all	>Lus10002756 pacid=23162062 polypeptide=Lus10002756 locus=Lus10002756.g ID=Lus10002756.BGIv1.0 annot-version=v1.0 MEFEKRKAATLSLIASSEADKSPKGFIDEPIIPLLNLLNSHPSYFTTSSCSGRISILSQPKPSSSSSATTPKKKARGGSWLFITHDHPADASTVVSLLFP PLAQDSSTVSDSTAHELVFRFEPLIIAVECRDVQSAQSLVSLAISSGFRESGITSASKKRIIVGIRCSIRMEVPLGDSDNLLVSREYVEFLVGVANQKME ANWQRTQGFFMALKRETGFVGDNLKAENGDCDLEDNQVGTAHRMEENAGLIGVPDQSISAIRVPIVGESVEKLFLWGHTSCTLGNNIVPGGILVFGGFGG KGRHARRNESLLLDPSRGTLENVDVDAAPSSRLGHTASVVGGLVFVIGGRTDPLNILNEVWLLDVARKQWRQIECGGSCFPPRHRHAAGVVGSKIYVLGG LNNDSILSSFHVLDTVNLQWKEVVVGGDQPCARHSHSMVAHKSKLFMFGGHNGEQALGELYSLDVDTCKWKKEKPAGRSPSARFSHSMFVYKNFIGIIGG CPVNQHFQDLALLDVEHQLWSHVRLDCIGKELLVRSTASVVDDNLVVIGGGAACYAFGTKFTEPLTVDLLPLASVEEKNVSIRSQHVITSYSHEEFVTSG TSAEDDGDSERQWVLQLKKNYAKLAKDMLKKFGWLDLRRKVYSLDNGLHIYFPITGNFFAKFTENATSVDQFDNHLSERLAGDKSLLNDVSSSAALRLLQ EFGGTKLADKVSEVRKVAKSPSQMMKEAVASLIKNKGLSQELLNEIPVRWERLGDIVVLPITSFKDPLWDSIREELWPIVATSLNAIRLARQGRVASNGT RDSTLELLVGDSGWVDHRENGVIYSFDVTKCMFSWGNLSEKLRMGRLNCEDEVVLDLFAGIGYFSLPFLVRAKAKQVYACEWNPKAVEALKRNLELNSVS DRCVVFEGDNRLNAPKEVADRVCLGLIPTSEGSWETAIKALKKEGGVLHVHGNVKDSEEATWTQHVVTSLDNISKSEADQAVLRYIGTGRSWEVVVEHVE RVKWYAPHIRHVVIDVRCRPIPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04670			Met-10+ like family protein / ...		Lus10002756 [exp]	0	1
AT4G20770			Pentatricopeptide repeat (PPR)...		Lus10038431 [exp]	2.0	0.8796
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10042683 [exp]	4.6	0.8811
AT3G13990			Kinase-related protein of unkn...		Lus10015640 [exp]	11.6	0.8647
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10035825 [exp]	18.8	0.8742
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	20.8	0.8616
AT5G09840			Putative endonuclease or glyco...		Lus10033511 [exp]	20.9	0.8697
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	21.2	0.8385
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	23.2	0.8598
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	26.4	0.8609
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	26.5	0.8547

Compare expression of checked genes

Lus10002756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.