Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 435 / 2e-137 disease resistance family protein / LRR family protein (.1) AT1G71400 265 / 3e-75 AtRLP12 receptor like protein 12 (.1) AT4G20140 269 / 5e-75 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G13810 250 / 7e-71 AtRLP47 receptor like protein 47 (.1.2) AT4G13920 251 / 5e-70 AtRLP50 receptor like protein 50 (.1) AT3G05660 250 / 6e-70 AtRLP33 receptor like protein 33 (.1) AT1G47890 252 / 7e-70 AtRLP7 receptor like protein 7 (.1) AT4G04220 248 / 2e-69 AtRLP46 receptor like protein 46 (.1) AT5G44700 251 / 4e-69 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G15080 238 / 2e-65 AtRLP19 receptor like protein 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016344 [exp] 1508 / 0 AT2G34930 399 / 1e-124 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1300 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1205 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1191 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1187 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10000236 [exp] 1175 / 0 AT2G34930 328 / 2e-101 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 1156 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1152 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1136 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 548 / 2e-179 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 533 / 4e-174 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 532 / 2e-173 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 520 / 2e-169 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 515 / 3e-167 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 511 / 9e-166 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 508 / 6e-165 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 508 / 6e-163 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 490 / 5e-156 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 484 / 3e-154 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002758 pacid=23162037 polypeptide=Lus10002758 locus=Lus10002758.g ID=Lus10002758.BGIv1.0 annot-version=v1.0 ATGACTGCTCCTGCAGTTTGTCTCCTTTGGCTAAGCTGGATGTGTTGCTATCGTGGCAGTTCTGGTGCTGGCTGCAATCTTGATGAAAAAGAAGCTCTTT TAAGTATCAAGGCGAATCTCGAAGACCCTTCAAGCCGGTTATATTCTTGGAGAGCAAGAAATGGAGATTGTTGTGCATGGTCTGGTGTGGTATGTGACAA CATTACTGGCCATGTCACTCAGCTTCATCTTGGATTGCCATATCTTTCGATGAATTCCCCGTTCAAGGGTAAGATAAGTCCTGCCTTACTTGTGTTGAAA AATCTCAGCTTTTTGGACCTGTCAAACAACAATTTCCAAGGGAATCCGATTCCAGCATTTCTTGGCTCTATGAGCAGTTTGAGATCTCTTTTCCTTGTCC GGTCTGGATTTGGGGGAGTCATCCCTCACCAACTTGGAAATCTCTCAAACTTGCATGAGCTTGGTCTTCAGGCTGGTGATGATGATGGTTATTTACTGTC TGCGGATAGTTTGCAGTGGCTTTCAGGTCTTCCTTCCTTAGAATACCTTGATTTGACAGAGGTTGATCTTAGCAATGCTTCTGATTGGCTCAACATGATA AACACTGCCCCTTATCTTTCAGAATTGTACCTAGCGCACTGTCAAATCCGCCACAATCCTCCTGTAGTACCTGTCAACCTGTCATCTTTATCCGTTCTTG ATCTGAGTTTCAATCAATTTGGTCCGACTTCATTTCCTAGCTGGGTTTCTCATCTCAAAAGCCTGACTTTTTTCGATCTTGGAAAAAACGACCTCGAAGG CCCAATTCCCGATGAGCTTCAGAACCTTACCTCCCTCGTAGCTCTTAGATTGTCTTCAAACAAGTTCAGTGGTTTTTTACCAGATTGGCTTTCCAGTTTT CACCATCTCAGGGATCTCAATCTTTACAGAAACCAGCTGAATGGTAAAGTATCAAGTGAAATTGGGAACTTAACCGCACTTGTTGACCTTGACTTGTCAT TCAACGAAGATCTTGAAGGCGGTATTCCAGTGTCATTCAAAAGTCTTTGCCATTTGAAGTCACTGGAGCTGACATACATAAAGCTACAGCAAAATGTAGC AGAAGTGCTTCAAATCCTCGGAGAATGTCCCGCTAGCACGCTAGAAAATCTGTCAATGGTAAACTGCCAACTATACGGTCAGTTGACTGATCGAATCGGG AAGTTCAACAGGCTAAACCGTCTTTCGCTTGATACCAACTCCATATCTGGCCCCCTTCCGTCCTCATTTGGGGAACTGACATCCTTGAAATATGTAAACC TCGCAAACAACCGAATTAACGGGAATATTCCAGAAAGTTTCGGGAAACTTGCAGAGTTGGTAATCTTTGATATTTCGCAGAACTCAATGGAAGGTGTTAT TTCCCCTGATATTCACTTTGCTAACCTGACAAAGTTGGGTAGATTGAGCGCATCTGGAAACCACATGGTACTGGAAGTTGGAGCAGATTCAGTTCTCCCT AAGCTCCTTGAAATAATAAACTTGAATTCCTGGCACATTGGACCTCGGTTCCCCAAATGGCTCCAATCATTTCAGTATCTCAAATCTCTCGATCTCTCCA ACACCGGAATTTCAGAACCATTTCCAGATTGGTTCTGGGGATCACAATCAGAGTTCTATTATCTGAACTTCTCCCACAACCAAATCCCAGGAAAGCTTCC AAATTTCATGTGTGTTAAGGCTGCAGACTCAATTTATGACTTCAGCTTTAACAACTTGGACGGTCCACTTCCAATCATCTCATCTAATTTGACTGCATTG GACCTTTCCAATAATTTCATCTCAGGAAACCTGCTCAAGTTCTTGTGCTTCAATCCAGCTCAGATGAGAGACACCGAGTTTCTCAATCTTCAAGGGAACC TTCTGTCTGGAGAGATACCAGATTGTTGGAGGAGTTGGGGGAACTTGAAGGTTATTAGACTAGGCAACAATGATTTCAAAGGGAACATTTCAAACTCCAT TGGAACCTTAAGCAACCTCCTCTCTTTGCGCATTCAGAACACTAGCCTGACTGGTGAAATCCCATTCTCCATCAGCAACTGCTCGAGTCTAGTCTCTATC GACTTCAGGGACAATAGATTACTAGGGAGAATTCCAAAGTGGATTGGGGAAAAACTTTCAAAGTTGGCCATCATCAATCTACGCGGGAATAGGTTCCATG GGGATATTCCTGATGAGGTTTGCCATCTGCAGCTTTTACAAATCCTGGACCTTTCTCACAACTTTCTATCAGGGAACTTGCCTGAATGTGTTAATAATAT CAGTGCCATGGCCGATACACGATACGTTGATCAAGCAGTAATATACCTTTACTTTGGCGGAGCGAAAGCATTTGTCGAAGACGAGATTCTCGTAATGCAA GGGCAGGTTAAGACCTACAGCACCATTTTGAATTACGTCAGAAGTCTGGACCTCTCCTCAAATTTGCTTTCAGGGGAGATTCCAAAGCAGATCACAAGCC TTGTAGCGTTGAAGTATCTGAACTTGTCGCGCAACTCGTTCTCTGGACCAATCCCGGGGAACATAGCTGCCATGGAGTCGTTGGAATCTTTGGACTTGTC CGAAAACAAACTACTCGGAATGATCCCAGTTGGAATGGCAAGCATGACATTCCTGAATCACTTGAATTTGTCCTGCAACAACTTGAGTGGGAGAATTCCT TCAAGCACACAACTGCAGAGCTTTGATCCATCTAGCTATGTTGGAAACAAGGGACTTTGTGGTTCTCCATTGATTGTGAACTGCAGCAGCGCTGACAACT TTGTGCCGGGTTCTGGCGAGGGAACTGAAGCTTATGATTCGCACTGGTTCCCTGTCAGTGCAATGCTTGGATATGTGGTAGGGTTTTGTGGCATTGTTGG TCCAGTAGCAGTCCACCAGCAATGGATCACATTGACGAAGTGA
AA sequence Show only first row Show all	>Lus10002758 pacid=23162037 polypeptide=Lus10002758 locus=Lus10002758.g ID=Lus10002758.BGIv1.0 annot-version=v1.0 MTAPAVCLLWLSWMCCYRGSSGAGCNLDEKEALLSIKANLEDPSSRLYSWRARNGDCCAWSGVVCDNITGHVTQLHLGLPYLSMNSPFKGKISPALLVLK NLSFLDLSNNNFQGNPIPAFLGSMSSLRSLFLVRSGFGGVIPHQLGNLSNLHELGLQAGDDDGYLLSADSLQWLSGLPSLEYLDLTEVDLSNASDWLNMI NTAPYLSELYLAHCQIRHNPPVVPVNLSSLSVLDLSFNQFGPTSFPSWVSHLKSLTFFDLGKNDLEGPIPDELQNLTSLVALRLSSNKFSGFLPDWLSSF HHLRDLNLYRNQLNGKVSSEIGNLTALVDLDLSFNEDLEGGIPVSFKSLCHLKSLELTYIKLQQNVAEVLQILGECPASTLENLSMVNCQLYGQLTDRIG KFNRLNRLSLDTNSISGPLPSSFGELTSLKYVNLANNRINGNIPESFGKLAELVIFDISQNSMEGVISPDIHFANLTKLGRLSASGNHMVLEVGADSVLP KLLEIINLNSWHIGPRFPKWLQSFQYLKSLDLSNTGISEPFPDWFWGSQSEFYYLNFSHNQIPGKLPNFMCVKAADSIYDFSFNNLDGPLPIISSNLTAL DLSNNFISGNLLKFLCFNPAQMRDTEFLNLQGNLLSGEIPDCWRSWGNLKVIRLGNNDFKGNISNSIGTLSNLLSLRIQNTSLTGEIPFSISNCSSLVSI DFRDNRLLGRIPKWIGEKLSKLAIINLRGNRFHGDIPDEVCHLQLLQILDLSHNFLSGNLPECVNNISAMADTRYVDQAVIYLYFGGAKAFVEDEILVMQ GQVKTYSTILNYVRSLDLSSNLLSGEIPKQITSLVALKYLNLSRNSFSGPIPGNIAAMESLESLDLSENKLLGMIPVGMASMTFLNHLNLSCNNLSGRIP SSTQLQSFDPSSYVGNKGLCGSPLIVNCSSADNFVPGSGEGTEAYDSHWFPVSAMLGYVVGFCGIVGPVAVHQQWITLTK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10002758 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	1.0	0.9080
AT2G34930			disease resistance family prot...		Lus10002757 [exp]	1.4	0.8918
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016893 [exp]	2.4	0.8368
AT1G68260			Thioesterase superfamily prote...		Lus10031936 [exp]	3.2	0.7304
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042320 [exp]	7.9	0.7463
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	10.5	0.7800
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	12.2	0.7816
					Lus10029758 [exp]	15.7	0.7195
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	17.2	0.7390
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	17.9	0.7188

Compare expression of checked genes

Lus10002758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.