Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55790 176 / 1e-50 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) AT5G56060 156 / 4e-46 Domain of unknown function (DUF2431) (.1) AT4G26485 135 / 1e-38 Domain of unknown function (DUF2431) (.1) AT5G56075 134 / 2e-37 Domain of unknown function (DUF2431) (.1) AT5G25030 121 / 6e-33 Domain of unknown function (DUF2431) (.1) AT1G55800 118 / 8e-31 Domain of unknown function (DUF2431) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000235 [exp] 675 / 0 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016345 [exp] 459 / 6e-163 AT1G55790 183 / 2e-53 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10039534 [exp] 269 / 1e-89 AT1G55790 173 / 9e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032900 [exp] 178 / 3e-53 AT1G55790 256 / 1e-81 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032898 [exp] 165 / 2e-48 AT1G55790 232 / 2e-72 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032901 [exp] 107 / 1e-26 AT1G55790 196 / 1e-58 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016346 [exp] 93 / 6e-22 AT1G55800 72 / 8e-15 Domain of unknown function (DUF2431) (.1) Lus10032899 [exp] 60 / 2e-10 AT1G55790 62 / 2e-21 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438100 [exp] 178 / 8e-55 AT1G55790 207 / 4e-64 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.003G101200 [exp] 181 / 1e-53 AT1G55790 276 / 8e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.006G002700 [exp] 172 / 4e-52 AT1G55790 185 / 1e-55 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141700 [exp] 166 / 5e-50 AT1G55790 198 / 1e-60 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141900 [exp] 164 / 5e-49 AT1G55790 219 / 7e-69 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G165600 [exp] 164 / 2e-47 AT1G55790 275 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438200 [exp] 142 / 5e-40 AT1G55790 169 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141501 [exp] 85 / 5e-20 AT4G26485 102 / 2e-28 Domain of unknown function (DUF2431) (.1) Potri.016G003133 [exp] 44 / 5e-06 AT1G55800 47 / 1e-07 Domain of unknown function (DUF2431) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10354 [flax] [poplar] DUF2431 Domain of unknown function (DUF2431)
Representative CDS sequence Show only first row Show all	>Lus10002759 pacid=23162053 polypeptide=Lus10002759 locus=Lus10002759.g ID=Lus10002759.BGIv1.0 annot-version=v1.0 ATGGGTCGATTCGTATCCTACATTCTCCGTTGTCTCTGCGGCGAAGAAGAAGAAAAACAGAGTACTCCCCTGCCTCCTCCACCAACCACCACCGACGGCG ATCACCTCCGTTCTCCACTCCTCCGTTCTCAAATCTCCGACAATGGCAGGAGACAAGGGTTGTTTTTCGTTTTGGAACAACGATCTGAACCTTCGAAACC TTTTGTTTTGTTGCCGGCATATAGCAACAGCAACTTGAAACTTGCTTCCTCTGCACAACCGCCGGCAGCAAAAGTTATTCCGGCCGTTCAAGCTGATCAT CGAGTTTCTACCAAGTTAAAAGAAAAGGCTCATCGAGTTCCCAATAAGTTGCGGGAAAAGGATTCTTCTGTTGTTGTTGTTGGGAAAAGCTTGAGTGCAG GAAATGAGGTATGGAAGAAGCATTACAGCAGCAACCAGAGGATTCTTCTGGTTGGAGAAGGAGATTTCTCATTCTCTTCCAGTTTGGCTTTCGTCTTTGG CTCTGCTGTCAACATTGTTGCTACTTCTCTTGATTCCCAAGAGTTTCTGTACAAGAACTACAAGAGAGCAATGACGAATATAGCAGGACTGTGGGCTAGA GGGTGCTTGGTAATCAACGAGCTGGATGCAACGAAAATGGCTGGACATGACTCCCTCAAAGGAATGAAGTTTGATCGGATCGTGTTCAACTTCCCTCATG CTGGATTCTACCCCAAAGAATCTGCAGTCGTGCAGATACGGAGGCATAAGAAGCTGATAAGAATGTTCATGGAGAATGCAAAGAAGTTGATGAAAGAAGA CGGCGGGGAAGTTCACATCACCCACAAAACCAATGGGTTCCATAGTCAGTGGGATTTAGAAGGATCGGCTAGTGGTGCAGGGTTGAAGCTGGTTGGGAGG CCTGAGAAGTTCAATTTCATAGAGTATCCAGGCTACAATACCAAGTATGGGTTCGGAGGTGACAAGAACTTCAATTGCAATCCCAGCAGTACCTTCATGT TTGGAGTTCCATAG
AA sequence Show only first row Show all	>Lus10002759 pacid=23162053 polypeptide=Lus10002759 locus=Lus10002759.g ID=Lus10002759.BGIv1.0 annot-version=v1.0 MGRFVSYILRCLCGEEEEKQSTPLPPPPTTTDGDHLRSPLLRSQISDNGRRQGLFFVLEQRSEPSKPFVLLPAYSNSNLKLASSAQPPAAKVIPAVQADH RVSTKLKEKAHRVPNKLREKDSSVVVVGKSLSAGNEVWKKHYSSNQRILLVGEGDFSFSSSLAFVFGSAVNIVATSLDSQEFLYKNYKRAMTNIAGLWAR GCLVINELDATKMAGHDSLKGMKFDRIVFNFPHAGFYPKESAVVQIRRHKKLIRMFMENAKKLMKEDGGEVHITHKTNGFHSQWDLEGSASGAGLKLVGR PEKFNFIEYPGYNTKYGFGGDKNFNCNPSSTFMFGVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55790			Domain of unknown function (DU...		Lus10002759 [exp]	0	1
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	1.0	0.9866
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	2.0	0.9310
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	2.4	0.9226
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10041133 [exp]	4.1	0.8790
AT1G08800			Protein of unknown function, D...		Lus10018782 [exp]	4.9	0.8728
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10036038 [exp]	4.9	0.9046
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	5.0	0.8994
AT3G21690			MATE efflux family protein (.1...		Lus10039675 [exp]	5.2	0.8916
AT5G16550			unknown protein		Lus10002085 [exp]	5.9	0.8929
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10007421 [exp]	6.8	0.8759

Compare expression of checked genes

Lus10002759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.