Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07940 481 / 1e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G05330 343 / 6e-112 AGD13 ARF-GAP domain 13 (.1) AT4G21160 341 / 6e-111 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT1G73580 142 / 8e-39 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G66360 138 / 2e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70790 135 / 3e-36 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70800 127 / 1e-33 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70810 123 / 2e-32 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G17980 123 / 2e-32 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G47710 123 / 3e-32 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016347 [exp] 1298 / 0 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10039538 [exp] 660 / 0 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10024165 [exp] 659 / 0 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10038539 [exp] 317 / 9e-102 AT4G21160 491 / 4e-176 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10023265 [exp] 301 / 2e-95 AT4G21160 495 / 3e-177 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10033585 [exp] 136 / 9e-37 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009684 [exp] 136 / 6e-36 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009053 [exp] 134 / 3e-35 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017629 [exp] 131 / 4e-35 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198301 [exp] 534 / 0 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 534 / 0 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G372000 [exp] 346 / 7e-113 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 345 / 1e-112 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G026400 [exp] 250 / 5e-77 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.012G047100 [exp] 141 / 8e-39 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G131500 [exp] 140 / 4e-38 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 138 / 2e-37 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.017G125500 [exp] 137 / 4e-37 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G110900 [exp] 134 / 7e-36 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0154 [flax] [poplar] PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10002760 pacid=23162055 polypeptide=Lus10002760 locus=Lus10002760.g ID=Lus10002760.BGIv1.0 annot-version=v1.0 ATGGCTTCAGTACCGTACAATGGTGATGACCATGCGCCACCAGGAGCTGGCCTAGAATTTCCAACCAGCCAACACCAGCCAATGGCTAGTCAACAGAATC CACAACCGACAGTGGCTAACTTACAAGCTCTATCTGAAAGTTCACAACAGCTGCCGGCGACCCAACGGTCTCCTTCACCACCATCTGACCACCAACAAGT CGCACTAAAAAATGCAGGACCATCAACTCTTCTGCAAAAACCAGATCGTTTAGAGCATGATGCTCGTCATCAAATGCCTTCTGCTAGCCTACAGTTCCCA TCATTTAGTCACTTTCTGGAACCAGATCGCTCACAACTGTCTCCAGGTAACCCCAAACCCTCTGCTACCTATGAACCAGTATCTATGGCACTATTTGTTG CACCGAAGTTGCCATCTCCTAGCCAAGAGAAACGATCTGATGTTGTGCACGAACCAACTAGCCATCGAGCATCACTAGATAGTCATGACCAATTGGATAG CCACTCACATCCATCGTCCGGGCTGGACTTGGAAACTCCAACTACCCAGCATCAACCATTAAACAGCAAGCAACAGTCAGAAACTACCCTGCAACCAAAA CCCAGGCAGAAAAAACCATCTATAACCTCTAAACTCCCAGGTAATAGCCTAGAGAAATCACCACCGACTGGCCAAGAAGTTGCAGGACAAGCTCCCTCCC ACCAGCAGCTCCCTTCAGGCAACCATCAACCGCCATCAGCTTGTCAACAACCCACACCAAATGTTCGAGAATCCTCAATTAACCATCGACCTGGTCATCG ATCAACAGTGAATGGGTCACAACCTCCATCAACTGGCCAACAGCATCCACAACTGACATCAGAGAATCTAAAATCTGCAGCTAATCATCAACCTGTACCA GGTGGCCGACGAAATGTGGAAGGCCGAAAATCATCTTCAGGTATTCTACAATCATGGGTAAGCCGTCAACTACAATTAAATCCTTTAAGGTCAACACCAG GTAACCTGCATTTACCGTCAGAGTCCTCACAATCATCACAAGATCATAGCCAACATTCAACAATGGCTAATCAATCATTGCCACATGCTAGCTCACAACG GCTTGCTGAAACAGAAATTCCACCTTCTAGCCTCGAACAAGCTCCATGTAACCCGCAACTTCCAAACACTCCATACCCACAGCTACAAACACAACAACAA ATTAGCCCACAAACTAGCCCGCAACCACAAACTAGCCTTCATGATCTCATGCATGCAGAAGTACACACCAAAAGCAAAAAGGACCACCGAAAATCTTCCG CTCCGCAGAAAAGGTTGGAGAAACTGCTGAGTCAATCATGCAATAAGCACTGTGCAGATTGTGGATCAACAGATCCAAAATGGGTATCTATAAGTCACGG AGTGTTTATTTGTATAAAGTGTTCTGGTGTTCATCGAAGCCTCGGAGTACATATCTCAAAGGTGTTATCAGTCAAGCTAGATGAATGGACAGATGATCAG GTCACTGCATTCATGGAGCTGGGTGGGAACATAGTTGTGAACAAGAAAATGGAAGCTTACATCCCAGAGGATTGTAAGAAACCAAAATCTGATGCACCTA TCGACGAGAGAGCTGACTTCATCAGGAGAAAATACGAGATGCTAGAATTTACAGACTTCAGCGAACATATGATATGCCCCTATGACCCAAATAAACCGAA CTCCAATGGCAATGGATCTTGTCAGGACAAGAGAAATTATGAGAAACAAACAACCAGACACCGCATTGGAAGTGCATTGAGGAGCAGCTGGATAAGAAAA GACGCCGAGCACAAGCCATCCAAGAAAAATATGTCTATGGCCGGCATGGTTGAATTTATTGGGTTAGTCAAGGTGAATGTGGTGAAAGGAACCAATCTGG CCATCAGAGATATGGTAACAAGTGACCCCTACGTCATCCTTGCATTAGGTCATCAATCAGTGAGGACCAGAGTGATAAAGAACAACCTGAATCCTGTGTG GAACGAAATTCTTATGCTGTCGATACCAGATGACATTCCTCCTCTTAAAGTGATTGTTTTCGACAAGGACACATTCTCGACAGACGACTTCATGGGAGAA GCCGAGATCGACATCCAGTCTCTGGTTTCTGCAGCGAGGGCCTACGAGACGTCTTCGATAAACGAGTCCACCCAGCTTGGGAAGTGGATGGCAAGCAGGG ACAACAGTCTGGTGAAAGATGGTGTGATCTCGTTGATAGATGGGAAAGTGAAGCAGGAAATCAGTCTGAGGCTGCAGAATGTTGAGAGGGGAGTGCTTGA GATTGAGCTTGAATGTGTCCCTCTAACTCAATGA
AA sequence Show only first row Show all	>Lus10002760 pacid=23162055 polypeptide=Lus10002760 locus=Lus10002760.g ID=Lus10002760.BGIv1.0 annot-version=v1.0 MASVPYNGDDHAPPGAGLEFPTSQHQPMASQQNPQPTVANLQALSESSQQLPATQRSPSPPSDHQQVALKNAGPSTLLQKPDRLEHDARHQMPSASLQFP SFSHFLEPDRSQLSPGNPKPSATYEPVSMALFVAPKLPSPSQEKRSDVVHEPTSHRASLDSHDQLDSHSHPSSGLDLETPTTQHQPLNSKQQSETTLQPK PRQKKPSITSKLPGNSLEKSPPTGQEVAGQAPSHQQLPSGNHQPPSACQQPTPNVRESSINHRPGHRSTVNGSQPPSTGQQHPQLTSENLKSAANHQPVP GGRRNVEGRKSSSGILQSWVSRQLQLNPLRSTPGNLHLPSESSQSSQDHSQHSTMANQSLPHASSQRLAETEIPPSSLEQAPCNPQLPNTPYPQLQTQQQ ISPQTSPQPQTSLHDLMHAEVHTKSKKDHRKSSAPQKRLEKLLSQSCNKHCADCGSTDPKWVSISHGVFICIKCSGVHRSLGVHISKVLSVKLDEWTDDQ VTAFMELGGNIVVNKKMEAYIPEDCKKPKSDAPIDERADFIRRKYEMLEFTDFSEHMICPYDPNKPNSNGNGSCQDKRNYEKQTTRHRIGSALRSSWIRK DAEHKPSKKNMSMAGMVEFIGLVKVNVVKGTNLAIRDMVTSDPYVILALGHQSVRTRVIKNNLNPVWNEILMLSIPDDIPPLKVIVFDKDTFSTDDFMGE AEIDIQSLVSAARAYETSSINESTQLGKWMASRDNSLVKDGVISLIDGKVKQEISLRLQNVERGVLEIELECVPLTQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10002760 [exp]	0	1
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10028389 [exp]	4.7	0.8090
					Lus10015768 [exp]	9.5	0.7677
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028590 [exp]	10.6	0.7798
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	14.8	0.7710
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10010517 [exp]	17.6	0.7742
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	21.9	0.7687
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10010977 [exp]	22.4	0.7326
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	24.5	0.7702
AT1G69630			F-box/RNI-like superfamily pro...		Lus10002239 [exp]	25.7	0.7602
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10016347 [exp]	26.1	0.7284

Compare expression of checked genes

Lus10002760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.