Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07300 561 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) AT2G44070 105 / 3e-25 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT5G38640 100 / 2e-22 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G53900 90 / 5e-19 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 90 / 5e-19 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G72340 82 / 5e-17 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT2G05830 76 / 7e-15 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016349 [exp] 703 / 0 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10037451 [exp] 93 / 2e-21 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10003938 [exp] 94 / 1e-20 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10038944 [exp] 90 / 6e-19 AT5G38640 694 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10027234 [exp] 88 / 3e-18 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10008417 [exp] 77 / 5e-15 AT2G05830 543 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10001970 [exp] 74 / 4e-14 AT2G05830 538 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G026100 [exp] 605 / 0 AT3G07300 632 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.003G199301 [exp] 594 / 0 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.T126106 [exp] 591 / 0 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.010G068600 [exp] 478 / 4e-168 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.001G163300 [exp] 96 / 1e-21 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.004G103700 [exp] 95 / 1e-20 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.003G072100 [exp] 93 / 1e-20 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.006G219900 [exp] 77 / 3e-15 AT2G05830 526 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01008 [flax] [poplar] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Lus10002762 pacid=23162040 polypeptide=Lus10002762 locus=Lus10002762.g ID=Lus10002762.BGIv1.0 annot-version=v1.0 ATGCCGGACGTCCAGGCCTTCGTTAATGACTTCCTCAGCAAGCTTAAGAAACGTAAAATTGAGGGCTCTCAAGCAACAGCAAAGCTGACCGCTGAAATCC TTCGCTCAGTGATTTCGCAGCAGAGGGTGCCTCATACGAATCAGGCCGGGGCCTTGATAGATGCTGTTGCAGCTATCGGACGGCAGCTCATGGCTGCAAA TCCTGTTGAGCTTGCTGTGGGAAATATTGTGAGGCGTGTTATAAACATTATTAGGGAAGAGGACCTTTCATTGACAACAGCCGCGGTTGGGGAGTTGAAC TTGTCAACAGTGAGTGATGACGACAATGACCTTGATCATGATGATCATCCACTTCTATCAGCAGCTGCCGCAGCTGCTGAATCAAGAAGCACCCTACGCC CACCATCCTTGCAATTGTTACTGGAGGGTGCACCTGATTCTGTTGCCGTTCCTCAACCAGCTTCATCTGGTGGTGATTCTGAAGAGAAAAGCAAATCTCA TGATAAAAATTCAACAACTCGAAAGCTGAAGCATGATGTCATTGAAGCAGTTAATGAGCTCATCCAAGATATCACAACGTGCCATGAACTGATTGCTGAG CAAGCTGTGGAGCATATTCATCACAATGAGGTAATATTAACTTTAGGAAGTTCAAAAACAGTGTTTGAGTTCCTGTGTGCCGCGAAAGAGAAGAAAAGAT CATTCCGAGTATTTGTTGCTGAGGGTGCTCCAAGGTATCAGGGGCATCAACTGGCAAAAGAATTAGTTGCAAGGGGAGTGCAGACCACCTTGATTGCTGA TTCTGCAGTTTTCGCTATAATTTCTCGAGTAAACAAGGTTATTGTTGGAGCTCATGCTGTGATGTCCAACGGCGGGGTCATAGCTCCTGTTGGAATGAAT ATGGTTGCACTAGCTGCTCAAAAGCATGCTGTTCCTTTTGTTGTGCTTGCTGGTAGTCATAAGTTGTGCCCGTCATATCCTCACAATCCGGAGGTCACAC TGAATGAGCTGAGGTCTCCATCAGAGCTGCTAGATTTCGGAGAATTTTCTGATTGCTTAGACTATGGGAGTGGCAACAGCGGCTCTCCCCTCCATGTTGT TAACCCAACATTTGATTATGTGCCACCAAAGGTCGTTAGTTTGTTCATCACAGATACTGGTGGACATAATCCTTCTTACATGTATCGGCTGATATCCGAT TATTACTCTGCTAATGATCTAGTGGTGCAAAGAAGTCATGCTGCAGGGAACTGA
AA sequence Show only first row Show all	>Lus10002762 pacid=23162040 polypeptide=Lus10002762 locus=Lus10002762.g ID=Lus10002762.BGIv1.0 annot-version=v1.0 MPDVQAFVNDFLSKLKKRKIEGSQATAKLTAEILRSVISQQRVPHTNQAGALIDAVAAIGRQLMAANPVELAVGNIVRRVINIIREEDLSLTTAAVGELN LSTVSDDDNDLDHDDHPLLSAAAAAAESRSTLRPPSLQLLLEGAPDSVAVPQPASSGGDSEEKSKSHDKNSTTRKLKHDVIEAVNELIQDITTCHELIAE QAVEHIHHNEVILTLGSSKTVFEFLCAAKEKKRSFRVFVAEGAPRYQGHQLAKELVARGVQTTLIADSAVFAIISRVNKVIVGAHAVMSNGGVIAPVGMN MVALAAQKHAVPFVVLAGSHKLCPSYPHNPEVTLNELRSPSELLDFGEFSDCLDYGSGNSGSPLHVVNPTFDYVPPKVVSLFITDTGGHNPSYMYRLISD YYSANDLVVQRSHAAGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10002762 [exp]	0	1
AT1G04860		ATUBP2, UBP2	ubiquitin-specific protease 2 ...		Lus10016664 [exp]	11.4	0.8136
AT5G46910			Transcription factor jumonji (...		Lus10035385 [exp]	16.4	0.7428
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	16.6	0.7267
AT1G06440			Ubiquitin carboxyl-terminal hy...		Lus10041673 [exp]	23.9	0.7817
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	24.8	0.7808
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	25.0	0.7884
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	25.5	0.7648
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	28.9	0.7919
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Lus10014335 [exp]	33.4	0.7317
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	35.4	0.7776

Compare expression of checked genes

Lus10002762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.