Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18950 132 / 1e-37 Integrin-linked protein kinase family (.1) AT3G58760 126 / 2e-35 Integrin-linked protein kinase family (.1) AT3G59830 105 / 1e-27 Integrin-linked protein kinase family (.1) AT2G31800 104 / 2e-27 Integrin-linked protein kinase family (.1) AT2G43850 99 / 3e-25 Integrin-linked protein kinase family (.1.2) AT5G37500 61 / 9e-12 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT3G02850 56 / 4e-10 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT2G03430 51 / 1e-08 Ankyrin repeat family protein (.1) AT1G14000 51 / 2e-08 VIK VH1-interacting kinase (.1) AT4G32500 51 / 3e-08 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029277 [exp] 220 / 5e-71 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10008350 [exp] 96 / 4e-24 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10027107 [exp] 96 / 4e-24 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10037851 [exp] 63 / 2e-12 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10030387 [exp] 63 / 2e-12 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10037694 [exp] 62 / 6e-12 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10015687 [exp] 61 / 8e-12 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10001999 [exp] 55 / 1e-09 AT3G02850 970 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10036033 [exp] 52 / 2e-09 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064400 [exp] 155 / 2e-46 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 99 / 2e-25 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.017G007800 [exp] 99 / 4e-25 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.002G158950 [exp] 69 / 8e-15 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.004G083300 [exp] 64 / 9e-13 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.017G135400 [exp] 63 / 2e-12 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.017G123100 [exp] 56 / 6e-10 AT4G18950 235 / 5e-73 Integrin-linked protein kinase family (.1) Potri.010G161300 [exp] 52 / 5e-09 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.012G043000 [exp] 53 / 6e-09 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.013G062000 [exp] 52 / 8e-09 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10002765 pacid=23164100 polypeptide=Lus10002765 locus=Lus10002765.g ID=Lus10002765.BGIv1.0 annot-version=v1.0 ATGGAGGCGAAGAATCCGGTGAGGTTCACACTAGGGAAGCAGTCGTCTTTGGCTCCGGATCGGGAGGTTGACGGGTCTGGTTCGTTTGAGGAAGCGATGG AAGGGATTGATCCGGGTGTCCGGTTAATGTACGCAGCTAACGAAGGGAATATTGATGGTATCCAGGAGCTGCTGGATTCGGGTATTGACATCAATTTCAG GGATATTGATAACCGGACTGCGCTTCACATTGCTGCTTGCCAAGGTTTGACAGACGTCACTTCGTTCTTGCTCGACAAAGGTGCCGAAGTTGACGTCAAG GATCGTTGGGGGAGCACGGTAAAGATTGAACCTTTCTTCCTACTGCTAGCATTTTCGCTTGTTCATTGA
AA sequence Show only first row Show all	>Lus10002765 pacid=23164100 polypeptide=Lus10002765 locus=Lus10002765.g ID=Lus10002765.BGIv1.0 annot-version=v1.0 MEAKNPVRFTLGKQSSLAPDREVDGSGSFEEAMEGIDPGVRLMYAANEGNIDGIQELLDSGIDINFRDIDNRTALHIAACQGLTDVTSFLLDKGAEVDVK DRWGSTVKIEPFFLLLAFSLVH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18950			Integrin-linked protein kinase...		Lus10002765 [exp]	0	1
AT1G27750			nucleic acid binding (.1)		Lus10007756 [exp]	2.2	0.7670
AT4G18950			Integrin-linked protein kinase...		Lus10029277 [exp]	2.4	0.7532
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011859 [exp]	6.7	0.7105
AT2G44500			O-fucosyltransferase family pr...		Lus10037475 [exp]	15.6	0.6814
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030454 [exp]	17.1	0.7203
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10005403 [exp]	17.9	0.6738
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	23.2	0.6495
AT1G18340			basal transcription factor com...		Lus10034501 [exp]	29.8	0.5586
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032668 [exp]	33.0	0.6852
AT2G30480			unknown protein		Lus10034450 [exp]	37.5	0.6372

Compare expression of checked genes

Lus10002765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.