Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18930 129 / 2e-38 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) AT4G18940 113 / 4e-32 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029278 [exp] 231 / 1e-78 AT4G18930 178 / 3e-57 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10002767 [exp] 172 / 3e-55 AT4G18930 172 / 4e-55 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G075600 [exp] 196 / 8e-65 AT4G18930 234 / 3e-79 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Potri.001G324500 [exp] 164 / 3e-52 AT4G18930 178 / 2e-57 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Potri.017G062400 [exp] 158 / 9e-50 AT4G18930 201 / 2e-66 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0247 [flax] [poplar] 2H PF07823 [flax] [poplar] CPDase Cyclic phosphodiesterase-like protein
Representative CDS sequence Show only first row Show all	>Lus10002766 pacid=23164102 polypeptide=Lus10002766 locus=Lus10002766.g ID=Lus10002766.BGIv1.0 annot-version=v1.0 ATGGAATCCCCCGGCGACGAGAGCAAGCAAGTCTACTCCGTATGGGCTGCCCCTCCGGAAAACGTCAGGTCTCAGCTCAAGAAGCTGATGGACGGTTTGA GATCCGAATTCGGCGGTCCGGAGTTCCAACCCCATGTCACCGTCGTCGGCGCCATATCGTTGACCGAGCAGGACGCTCTCAGCAAGTTCAAATCCGCTTG TCAACGTCTCAAGCCCTATACCGCGACCGTTGTGGAAGCTAGCTCACTCTGCTCCGAGCATTTTGGGTACAAGAATTCCTCTCCTTACATGCCTCATCTA AGTCTTCTGTACGGTGATCTGAGCGACGAAGAGAAGAAGAAGGCGCAAGAGAAGGTGGTCCAGCTCGACGAAACCATCAATAGCTTTCCGATCAGTCGTC TGGAGCTGTGGAAGATGGATACCGGAGACAACTCTCTCAAGTCATGGGAGAAGATCTCAGAGTACACCCTCACCACAAACTAG
AA sequence Show only first row Show all	>Lus10002766 pacid=23164102 polypeptide=Lus10002766 locus=Lus10002766.g ID=Lus10002766.BGIv1.0 annot-version=v1.0 MESPGDESKQVYSVWAAPPENVRSQLKKLMDGLRSEFGGPEFQPHVTVVGAISLTEQDALSKFKSACQRLKPYTATVVEASSLCSEHFGYKNSSPYMPHL SLLYGDLSDEEKKKAQEKVVQLDETINSFPISRLELWKMDTGDNSLKSWEKISEYTLTTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002766 [exp]	0	1
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10020550 [exp]	3.5	0.8994
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002767 [exp]	5.7	0.9213
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10041165 [exp]	12.8	0.8592
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10025975 [exp]	13.2	0.8312
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	20.3	0.8898
AT2G27240			Aluminium activated malate tra...		Lus10001846 [exp]	30.0	0.8446
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10005276 [exp]	33.2	0.8189
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	34.7	0.8469
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10017826 [exp]	40.2	0.8255
AT1G55230			Family of unknown function (DU...		Lus10039191 [exp]	43.6	0.8382

Compare expression of checked genes

Lus10002766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.