Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29690 850 / 0 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) AT4G24290 451 / 7e-153 MAC/Perforin domain-containing protein (.1.2) AT1G28380 396 / 3e-131 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 379 / 1e-124 MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029279 [exp] 1051 / 0 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10025153 [exp] 587 / 0 AT1G29690 595 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 446 / 2e-150 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 422 / 3e-141 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 416 / 7e-139 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 402 / 1e-133 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 399 / 3e-132 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 393 / 4e-130 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10037363 [exp] 383 / 1e-126 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064000 [exp] 951 / 0 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 936 / 0 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.016G135100 [exp] 696 / 0 AT1G29690 717 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.006G107900 [exp] 678 / 0 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 458 / 2e-155 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.008G136401 [exp] 434 / 2e-146 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 424 / 2e-142 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.001G305600 [exp] 418 / 4e-140 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 418 / 5e-140 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.011G057100 [exp] 409 / 1e-136 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10002768 pacid=23164098 polypeptide=Lus10002768 locus=Lus10002768.g ID=Lus10002768.BGIv1.0 annot-version=v1.0 ATGAGCTTGAGCTCTGATGCATTGAAGACTACCCTTCAGAACTCAATCCAAGCTTTAGGTAGGGGATTCGATGTCACATCTGACATAAGGCTGCTCTACT GCAAAGGAGCTTCTGGGGCGAGGTTGGTTCCGATCGATGAGGAGAATACCAGGAATCTCATTGCAGGTGGTGGTGGTGATGGGGATGAGGTTGTTGTCCC TGATGCATCTGTTGATATTGAGTGCTCTAAGGGGAAGAGAAGCATTGAGAGGATTCCTGTTTGCAGCTTCCATGAGATGGCAGAGCAGTTCAATGAGAAA TCTGGGATATCTGGAAAGATACCACTTGGAAGCTTTAATGCCATGTTTAATTTCACTGGTTCGTGGCGAGTTGATGCTGCAGCAACGAAATCACTTGCAA TGGTTGGGCATTTCATCCCACTATATAAGGTCCAACTAGCAAAGGTGAATTTGGTTTTGCAAGAGGAGGTGAAAAAAGCTGTTCCTTATTCATGGGATCC TGCATCCCTTGCAAGCTTCATTGAAAGTTATGGTACCCACATTGTTACATCTGCAACAATTGGTGGAAGAGATGTGGTTTACATCAGGCAGCATCAGTCA TCACCTTTGACAGTGACCGACATTGAAACGTATGTGAAGGACATCGCGGATCAGCGGTTCCAAGAAAGTTCGACTACATCTGCCCCCCTAAATTATAAGG ACAAGGATGTAACAGTCATTTATAGACGAAGAGGGGGCGACGATCTCGAGCAGAGCCACGCGAAATGGGCAGACACGGTTCAATTGGCTCCCGATGTGAT TAACATGACATTTACACCTATAGTGTCCTTGCTTGAAGGAGTGCCCGGAATTAAGCACTTAAGCCGTGCAAGCGACTTGTACTTAGAATATAAGCCACCG ATCGAAGATCTGCAGTACTTCTTGGATTTCCAGATTGCGCAAGTTTGGGCTCCAGAACAGAATAGCCTCCAAAGGAAAGAACCTGTTTGTAAATCCCTTC AGTTCAGCTTAATGGGTCCGAAGCTGTATATCAGTCCAGATCAGGTAACAGTAGGGCGTAAACCAGTTACTGGGCTTAGACTAAGCTTAGAAGGTATCAA GCAAAACAGGCTAGCTATTCATTTACAGCATTTAGTGTCACTGCCCAAAATCCTACAGCCACATTGGGACACGCACATGGCCATAGGCGCGCCCAAATGG CATGGTCCCGAGGAGCAAGACAGTCGTTGGTTTGAGCCCATAAAGTGGAAGAACTTCTCCCATGTCAGCACAGCTCCGATCGAGTACACCGAGACATCCA TCGGAGACCTATCTGGGGTCCACATTGTCACGGGAGCTCAACTTGGCGTGTGGGAATTCGGTGCCAAGAACGTCCTACACCTCAAGCTCCTCTTCTCCAA AGTCCCCGGATGCACTATTAGGCGTTCGGTATGGGACCACAGTCCTTCAACCCCTAGCGTACAATCATCATCCTCGTCATCAGGGTCCTCATCTTCAGGA GGTTCGACGAGTGAGAGAGACGGTTCGAGCCAAGTAGGGAAGCTAATCAAGATCGTTGATATGAGTGAGATGTCGAGGGGGGCACAGGATATACCGGGGC ATTGGTTGGTAACGGGAGCTAAGCTCGGTGTAGACAAGGGGAAAATTGTCTTGCGCGCCAAGTATTCATTGTTGAACTATTAA
AA sequence Show only first row Show all	>Lus10002768 pacid=23164098 polypeptide=Lus10002768 locus=Lus10002768.g ID=Lus10002768.BGIv1.0 annot-version=v1.0 MSLSSDALKTTLQNSIQALGRGFDVTSDIRLLYCKGASGARLVPIDEENTRNLIAGGGGDGDEVVVPDASVDIECSKGKRSIERIPVCSFHEMAEQFNEK SGISGKIPLGSFNAMFNFTGSWRVDAAATKSLAMVGHFIPLYKVQLAKVNLVLQEEVKKAVPYSWDPASLASFIESYGTHIVTSATIGGRDVVYIRQHQS SPLTVTDIETYVKDIADQRFQESSTTSAPLNYKDKDVTVIYRRRGGDDLEQSHAKWADTVQLAPDVINMTFTPIVSLLEGVPGIKHLSRASDLYLEYKPP IEDLQYFLDFQIAQVWAPEQNSLQRKEPVCKSLQFSLMGPKLYISPDQVTVGRKPVTGLRLSLEGIKQNRLAIHLQHLVSLPKILQPHWDTHMAIGAPKW HGPEEQDSRWFEPIKWKNFSHVSTAPIEYTETSIGDLSGVHIVTGAQLGVWEFGAKNVLHLKLLFSKVPGCTIRRSVWDHSPSTPSVQSSSSSSGSSSSG GSTSERDGSSQVGKLIKIVDMSEMSRGAQDIPGHWLVTGAKLGVDKGKIVLRAKYSLLNY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29690		CAD1	constitutively activated cell ...		Lus10002768 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	3.5	0.9038
AT5G54165			unknown protein		Lus10023231 [exp]	4.9	0.8885
AT3G49070			Protein of unknown function (D...		Lus10027501 [exp]	6.9	0.8052
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	7.1	0.8777
AT5G17680			disease resistance protein (TI...		Lus10041060 [exp]	7.9	0.8515
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10035071 [exp]	8.4	0.8352
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009798 [exp]	8.9	0.8612
AT3G11760			unknown protein		Lus10013598 [exp]	11.0	0.8427
AT1G32928			unknown protein		Lus10033221 [exp]	11.0	0.8393
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	13.6	0.8058

Compare expression of checked genes

Lus10002768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.