Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15680 64 / 2e-11 F-box family protein (.1) AT3G23950 56 / 7e-09 F-box family protein (.1) AT3G23970 50 / 5e-07 F-box family protein (.1) AT3G61590 48 / 3e-06 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G46912 47 / 3e-06 F-box associated ubiquitination effector family protein (.1.2) AT1G49990 48 / 4e-06 F-box family protein (.1) AT1G46840 48 / 4e-06 F-box family protein (.1) AT4G22430 48 / 4e-06 F-box family protein (.1) AT3G16590 46 / 1e-05 F-box and associated interaction domains-containing protein (.1) AT2G27520 44 / 6e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013986 [exp] 432 / 1e-150 ND 55 / 7e-08 Lus10040838 [exp] 424 / 2e-147 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10007302 [exp] 385 / 1e-133 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10016522 [exp] 369 / 5e-124 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10013987 [exp] 370 / 5e-123 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10003349 [exp] 328 / 4e-108 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10040816 [exp] 290 / 3e-96 ND / Lus10007303 [exp] 231 / 1e-74 AT3G23950 45 / 6e-05 F-box family protein (.1) Lus10035796 [exp] 202 / 1e-61 ND 45 / 1e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 103 / 2e-25 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.009G132400 [exp] 75 / 3e-15 ND / Potri.011G000700 [exp] 74 / 1e-14 AT3G15910 58 / 5e-09 unknown protein Potri.007G027300 [exp] 58 / 1e-09 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.005G043500 [exp] 56 / 9e-09 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.004G000900 [exp] 49 / 1e-06 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.013G067800 [exp] 49 / 1e-06 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.008G016300 [exp] 45 / 1e-05 AT5G07610 53 / 2e-08 F-box family protein (.1) Potri.004G112400 [exp] 45 / 3e-05 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G027200 [exp] 45 / 3e-05 AT5G07610 84 / 1e-17 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10002769 pacid=23164106 polypeptide=Lus10002769 locus=Lus10002769.g ID=Lus10002769.BGIv1.0 annot-version=v1.0 ATGTACGCCATGGCGACCGAGAACTGTCACTCTGATTGTAATTTTCCGCCAAGTGGACTCCGTCGCTGTTCGGCAAAAAGACAACGAATCAGTTCACAAG CAAACCTTCCTAATAGCAAACTCGGAGCCGAGCTCCTAGCAGAGATTCTGATTCGCCTCCCAATCCTAGAATCCGCCTGCCGTTGTAGACTCGTCTGCAA GCGATGGGACTCCCTGATCTCCAGTCCTCGCTTCAACCGCCGTTTCGTTTCTCACCACCAGACCATGAACCATCCACCTATGCTTATGGATCCATACGAG CTGAAATCTGCCATCCTCAGCTTTCTCCCTCCCATGCCTAGCACAGTTGGAGACGCTCTCAAAGTTTTGGATTGCAACAAGGACTTGGTATTATGCGGGT TTTGGGATATCTGCTGCGAGGATGGGGAACGTAGCAGAACGTATTTGGTGTGCAATCCATTTACGAAGCAGTGGATCGCTCTTCCTTTATCACCTAGGAA GCATGGGCGTTACACGTTGCCCGCTGCAAGGTTAGTTTGTGAACCCCGGAATTTTAATAAGCTTGATCTAGGTGGAGATGACCAAGAAGCAGCATTTGTT TATTCTGAGCATCGCTTCCGTGTGGTTTGTATGTATCAAGTCCCTCTACCGATCCCTGCTATAGAGCTAGATGTGTTTTGTTCGGATTCTGGAGAATGGA CCAAGGAAGCTCTTGTCTGTGATGATCATGTTAGAACTGGTTCGAAAAGTGTAATTTCGTGCAATGGGGAGTTGTTTTGGAAGTATTTTGAAGGCGTTTC TGGCTGTGTTTAA
AA sequence Show only first row Show all	>Lus10002769 pacid=23164106 polypeptide=Lus10002769 locus=Lus10002769.g ID=Lus10002769.BGIv1.0 annot-version=v1.0 MYAMATENCHSDCNFPPSGLRRCSAKRQRISSQANLPNSKLGAELLAEILIRLPILESACRCRLVCKRWDSLISSPRFNRRFVSHHQTMNHPPMLMDPYE LKSAILSFLPPMPSTVGDALKVLDCNKDLVLCGFWDICCEDGERSRTYLVCNPFTKQWIALPLSPRKHGRYTLPAARLVCEPRNFNKLDLGGDDQEAAFV YSEHRFRVVCMYQVPLPIPAIELDVFCSDSGEWTKEALVCDDHVRTGSKSVISCNGELFWKYFEGVSGCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15680			F-box family protein (.1)		Lus10002769 [exp]	0	1
AT5G59190			subtilase family protein (.1)		Lus10004683 [exp]	70.0	0.5585

Compare expression of checked genes

Lus10002769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.