Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 291 / 2e-94 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 280 / 6e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 273 / 2e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 270 / 5e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19010 256 / 3e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 257 / 5e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 244 / 4e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 244 / 5e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19060 237 / 1e-73 SGNH hydrolase-type esterase superfamily protein (.1) AT4G30140 231 / 2e-71 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029280 [exp] 622 / 0 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 475 / 2e-166 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 458 / 8e-160 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029281 [exp] 423 / 6e-146 AT1G29670 270 / 3e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002772 [exp] 416 / 4e-143 AT1G29670 275 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 282 / 9e-91 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 281 / 2e-90 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 279 / 1e-89 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 278 / 7e-89 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008902 [exp] 302 / 8e-99 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 302 / 8e-99 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 301 / 2e-98 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 301 / 2e-98 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 300 / 5e-98 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 300 / 8e-98 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 295 / 1e-95 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 293 / 4e-95 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G213700 [exp] 291 / 2e-94 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G060700 [exp] 290 / 3e-94 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10002770 pacid=23164109 polypeptide=Lus10002770 locus=Lus10002770.g ID=Lus10002770.BGIv1.0 annot-version=v1.0 ATGGGAAGGCCTTTAAATTTGAAACCGCCGTCTTTGTCTTCTTTATTCATCGTTGTTGTTGGATTGGTAGGTGTCGCCGCCGCCGGACCCCCGCAAGTGC CGTGCTATTTCATATTCGTAGACTCTCTATTTGACAATCGCAATAACAACAATCTCAACACGTTGAACAAGGTCAACTACCTTCCTTACGGCGATAGTTT TCCTGCCGTCCCGACCGGTCGGTTCACCGATGGAGGAACCTCCGTCGACATAATTGGTTGCACCAAAGGTGTCATTGCAACCACATGCGAGACTAATGAC TCGCTATGTGTCGACTCACTGAACCAATTGGTTGCTCCGTTCAATTTTCATCTCCGGTCACTGGTTGACCGGCTTATTGTCGATTTACTTGACTCCAAAT TCATGTACCTAGATTCTACATCGGCCGAGAATCTTGTGGCCCAAGCGTTTGGAATCAAAACAGTGCCTTGTTGTGATCAAGTGAGCTCCGAACTGGTTTG TGCATTCCAAATTCATTACCATGTCCGGTTTCAGTCTTTATTGATCATTGTTGTTCTTGTAATGTTGGGAGCTACCGCCGCCGAGGGATCATCACGCCGG CCGCCCGAAGTCCCTTGCTACTTCATATTTGGAGACTCGCTATTCGACAATGGTAATAACAACAACCTCCAAACGCCGTCGAAGGTCAATTACCCTCCTT ACGGCGTTGACTTTCCCGCCGGTCCGACCGGTCGGTACTCCGATGGACGAACTACGGCCGACATAGTTGGTGAACTCTTGGGTTTTGATAACTTCATCCC ATCTTTTGCATCCAATCCTAACCGATCGGAATTACTCGTCGGAGTAAATTATGCATCTGGAGGGGCAGGGATTCTGGTCGAAACTGGAAAACAAGTGGGT GACAATGTAGACTTGAGCAAGCAATTGAGAAACCACGGCACGACCGTTTCGAACTTAGTTGAAATTTTAAGAAGTAAAGGATCAGCTCATCGTCATTTGG CCAAATGTTTGTACATATCAAATATGGGGAATAACGATTACCTCAACAACTATCTTCTTCCACAATCTTCGTCAATAAGGGAAAAGTACAACCCTGATCA GTTCGCAACACTTCTCATCGCAAAGTATTCTAACCAAATGAAGAGGATGTACAACTTGGGAGCAAGGAAGGTAGGGTTGGCTGGAGTCCTCCCTATAGGT TGCACCCCAAGTGCCATTGCAGCTTCTAAGGACTCCGTTTGTGACGACTCATTGAACCAACTAGTGGAGCCATTCAATGTCCGGCTCCGATTACTTGTTG GCCGGCTCAATGTTGAATTCCCTGATGCAAAATTTGTGTACCTCGACTCGACATTAGCGACGAATCGTGCCCTCCAAGCTTTGGATGTCAAAACGGCGTC GTGTTGTCAAGCGAGTTCAGTGACTGGGAATTGCATTCCCAACTCGGTCCCATGTACAGATAGATGGTCGTATGTGTTTTGGGACGCATTTCACCCGACT GAAGTTGCAAATCGGATTGTCGCATTGGTTTACTATCGGGCTATTAAACGGATATTGTAA
AA sequence Show only first row Show all	>Lus10002770 pacid=23164109 polypeptide=Lus10002770 locus=Lus10002770.g ID=Lus10002770.BGIv1.0 annot-version=v1.0 MGRPLNLKPPSLSSLFIVVVGLVGVAAAGPPQVPCYFIFVDSLFDNRNNNNLNTLNKVNYLPYGDSFPAVPTGRFTDGGTSVDIIGCTKGVIATTCETND SLCVDSLNQLVAPFNFHLRSLVDRLIVDLLDSKFMYLDSTSAENLVAQAFGIKTVPCCDQVSSELVCAFQIHYHVRFQSLLIIVVLVMLGATAAEGSSRR PPEVPCYFIFGDSLFDNGNNNNLQTPSKVNYPPYGVDFPAGPTGRYSDGRTTADIVGELLGFDNFIPSFASNPNRSELLVGVNYASGGAGILVETGKQVG DNVDLSKQLRNHGTTVSNLVEILRSKGSAHRHLAKCLYISNMGNNDYLNNYLLPQSSSIREKYNPDQFATLLIAKYSNQMKRMYNLGARKVGLAGVLPIG CTPSAIAASKDSVCDDSLNQLVEPFNVRLRLLVGRLNVEFPDAKFVYLDSTLATNRALQALDVKTASCCQASSVTGNCIPNSVPCTDRWSYVFWDAFHPT EVANRIVALVYYRAIKRIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002770 [exp]	0	1
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10019534 [exp]	4.0	0.7901
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	5.2	0.7819
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	5.5	0.7819
AT5G28470			Major facilitator superfamily ...		Lus10024345 [exp]	9.8	0.7632
AT5G55550			RNA-binding (RRM/RBD/RNP motif...		Lus10011728 [exp]	11.7	0.7135
					Lus10026124 [exp]	12.3	0.7442
AT5G41720			unknown protein		Lus10006473 [exp]	12.5	0.7580
AT4G20190			unknown protein		Lus10036246 [exp]	15.5	0.6589
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	24.9	0.7008
					Lus10036058 [exp]	26.5	0.7192

Compare expression of checked genes

Lus10002770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.