Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45670 61 / 1e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 60 / 2e-10 SGNH hydrolase-type esterase superfamily protein (.1) AT4G18970 60 / 2e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19050 59 / 4e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 57 / 3e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 56 / 6e-09 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 55 / 1e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 52 / 6e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G43550 52 / 6e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 52 / 1e-07 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012001 [exp] 114 / 9e-31 AT1G29670 103 / 1e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 87 / 9e-20 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 84 / 1e-18 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012000 [exp] 77 / 3e-17 AT1G29670 105 / 3e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000136 [exp] 77 / 5e-17 AT1G29670 105 / 8e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029281 [exp] 78 / 1e-16 AT1G29670 270 / 3e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002770 [exp] 78 / 2e-16 AT1G29670 307 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 71 / 4e-14 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10010762 [exp] 68 / 4e-14 AT5G45670 129 / 1e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060700 [exp] 74 / 2e-15 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G008100 [exp] 72 / 1e-14 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G213700 [exp] 68 / 3e-13 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 65 / 3e-12 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G075900 [exp] 65 / 5e-12 AT1G29660 318 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 65 / 5e-12 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 64 / 6e-12 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 64 / 6e-12 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 64 / 6e-12 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 64 / 6e-12 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10002771 pacid=23164112 polypeptide=Lus10002771 locus=Lus10002771.g ID=Lus10002771.BGIv1.0 annot-version=v1.0 ATGTCGAATAAGAAGAAGTCGCCGCCGGCAACTTTACTGATTGTCGTCGTTGTTCTAGCATTGGTAGCTTCCGCCACCGTCGATGGAGCACCAAAAGTGC CGTGCTACTTCATATTCGGAGACTCTCTATTCGACAGTGGCAATAACAACAATCTCAACACGTTGACCAAATCCAATTACCCGCCTTACGGCATTGCTTT CCCCGCCGGTCCAACTGGCTGGTTCACCACGGCCGATCGGATGTACAAATTGGGAGCAAGGAAGGTTGGGTTGGTCAGAGTTTCATGCATAGGTTGCACC CCAGGTGTCATCGCTGCCTCTGGTGGGACCAACGGCTTGCCCTATAATGAGCTAGTCAACCAGATAATGAAGCCGTTCAATGTCCGCCTTCAATTGGTTG TTGGTCGGTTCAATGCTGATTTCCCGATGCAAAATTCATCTACCTTGATTCGACAGCGGCTGGCACTCTTGCCGGACAAGAAAACATCAGCTAGGGATAG AGCCGTAAGCTCGGGTACGAGCATGGCTGGGCGGTCGATTGCTCGATTATTTGTTGCGGTAGGTGTTTTGGCTGTTGGCGGGATGGTTATCGAATTGATT GGAAAGGATGCAATGGCGGCCTGTGTTGGAGTCGGCGGCATGATCCCTGCCGTGGATGCGAAGGCTGCCTCAGTGCGATCGACAGATCTGTGA
AA sequence Show only first row Show all	>Lus10002771 pacid=23164112 polypeptide=Lus10002771 locus=Lus10002771.g ID=Lus10002771.BGIv1.0 annot-version=v1.0 MSNKKKSPPATLLIVVVVLALVASATVDGAPKVPCYFIFGDSLFDSGNNNNLNTLTKSNYPPYGIAFPAGPTGWFTTADRMYKLGARKVGLVRVSCIGCT PGVIAASGGTNGLPYNELVNQIMKPFNVRLQLVVGRFNADFPMQNSSTLIRQRLALLPDKKTSARDRAVSSGTSMAGRSIARLFVAVGVLAVGGMVIELI GKDAMAACVGVGGMIPAVDAKAASVRSTDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19050			GDSL-like Lipase/Acylhydrolase...		Lus10002771 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	2.0	0.8055
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10001068 [exp]	5.5	0.7970
AT3G05610			Plant invertase/pectin methyle...		Lus10020681 [exp]	7.3	0.7683
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10008698 [exp]	11.2	0.7060
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10013802 [exp]	13.6	0.7797
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10027396 [exp]	15.0	0.7377
AT3G09110			Protein of unknown function (D...		Lus10003163 [exp]	16.0	0.6997
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	22.6	0.7809
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	22.9	0.7041
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	26.9	0.6924

Compare expression of checked genes

Lus10002771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.