Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 252 / 3e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 241 / 7e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 236 / 3e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19050 233 / 4e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 233 / 4e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 216 / 2e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 214 / 2e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19010 211 / 1e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 211 / 2e-65 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 205 / 3e-63 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029281 [exp] 455 / 5e-161 AT1G29670 270 / 3e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 451 / 8e-160 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 416 / 9e-146 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002770 [exp] 421 / 2e-145 AT1G29670 307 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 415 / 2e-145 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012001 [exp] 259 / 2e-85 AT1G29670 103 / 1e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 257 / 3e-83 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 249 / 4e-80 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 249 / 7e-80 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008902 [exp] 283 / 1e-93 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 281 / 7e-93 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 281 / 9e-93 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 281 / 1e-92 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 280 / 2e-92 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 280 / 3e-92 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G213700 [exp] 275 / 2e-90 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 275 / 2e-90 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G075900 [exp] 263 / 8e-86 AT1G29660 318 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008100 [exp] 259 / 3e-84 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10002772 pacid=23164117 polypeptide=Lus10002772 locus=Lus10002772.g ID=Lus10002772.BGIv1.0 annot-version=v1.0 ATGGGAACGCCTTCAATTTTGAGGACGACGTCGTTTCCTTTATGGTTCACTATTGTTGTAGTAACGGTAGCCTCCGCCGCCGGCGGATCATCGCCGTCGC CGGAAGTGCCGTGCTACTTCATATTCGGAGACTCTATATTCGACAGTGGGAATAACAACAATCTCGCCACGTCCATGAAGGCCGATTACCTTCCTTATGG ATCTGATTTTCCGGCCGGCCCAACCGGACGATTCACCAATGGACAAACCACGGCTGATATACTTGGTGAACTCATGGGATTTGACAGCTTCATCCCATCT TTTGCTTCAAAACCTAACCGGTCAGAGCTGCTCGTCGGAGTAAATTATGCATCTGCATCGGCTGGAATTCTGTTCCAGAGTGGAAAACTGTCGGGTGATA ACTTTGATATGGACAGACAAGTGAGGAATCATGGCCTTATTGTATCAAGCATAGCTAACATTTTAGGGAGCAGAAAGTCGGCCTATGACTATCTAGCAAA ATGTTTGTACATATCTAATGTAGTCAATAACGACTACGTCAACAACTATCTTCTTCCTCAATCGGCCAATATCAGACAATTATACAATCAAGATCAATTT GCTGAACTACTTGTCCGAACATATTCTTTTCAGATTAAGTGTCTGTACAACTTCGGAGCAAGGAAGGTTGCGTTGGCCGGAGTTTTGCCCATAGGCTGCA CCCCAAGTGCCATTGCAACCGCCGGTGGGACTAATGGCTCGCTATGTGTCGACTCGCTTAACCAACTAGTGGCACCATTCAACTCTCGTCTTCGGGTGCT TGTTGACCGGCTCAACGTTGACTTTCCAGACGCGAAATTTGTGTACCTCGATTCCACGTCAGCCTTCAACCTTGCTAGCCAAGCGCTTGGGATTAAAACG GCGCCGTGCTGTCAAGCCCGTTCTACAGATGGTTTGTGCATTCCGAATTCAGTTCCATGCCCAGTTTCGGTTAGACAGTCCTATTTGTTTTGGGACGCAC TCCACCCAACCGAATCAGCGAATCGGGTTGTGGCACCAGCTTTTTATCAGACTATCGAACCGATCTTGTAA
AA sequence Show only first row Show all	>Lus10002772 pacid=23164117 polypeptide=Lus10002772 locus=Lus10002772.g ID=Lus10002772.BGIv1.0 annot-version=v1.0 MGTPSILRTTSFPLWFTIVVVTVASAAGGSSPSPEVPCYFIFGDSIFDSGNNNNLATSMKADYLPYGSDFPAGPTGRFTNGQTTADILGELMGFDSFIPS FASKPNRSELLVGVNYASASAGILFQSGKLSGDNFDMDRQVRNHGLIVSSIANILGSRKSAYDYLAKCLYISNVVNNDYVNNYLLPQSANIRQLYNQDQF AELLVRTYSFQIKCLYNFGARKVALAGVLPIGCTPSAIATAGGTNGSLCVDSLNQLVAPFNSRLRVLVDRLNVDFPDAKFVYLDSTSAFNLASQALGIKT APCCQARSTDGLCIPNSVPCPVSVRQSYLFWDALHPTESANRVVAPAFYQTIEPIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002772 [exp]	0	1

Compare expression of checked genes

Lus10002772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.