Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18970 250 / 9e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G45670 250 / 2e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 249 / 4e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 246 / 7e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 231 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 224 / 3e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 221 / 1e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 211 / 2e-65 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 210 / 3e-65 SGNH hydrolase-type esterase superfamily protein (.1) AT5G08460 197 / 6e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012002 [exp] 446 / 2e-157 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 433 / 1e-152 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002770 [exp] 439 / 3e-152 AT1G29670 307 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029281 [exp] 424 / 6e-149 AT1G29670 270 / 3e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002772 [exp] 402 / 4e-140 AT1G29670 275 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012000 [exp] 263 / 6e-88 AT1G29670 105 / 3e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000136 [exp] 262 / 3e-87 AT1G29670 105 / 8e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 266 / 1e-86 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 265 / 2e-86 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008402 [exp] 283 / 2e-93 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 283 / 2e-93 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 281 / 1e-92 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 279 / 5e-92 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 279 / 6e-92 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 279 / 7e-92 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 278 / 2e-91 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G213700 [exp] 275 / 3e-90 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 273 / 1e-89 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G060700 [exp] 266 / 2e-87 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10002773 pacid=23164107 polypeptide=Lus10002773 locus=Lus10002773.g ID=Lus10002773.BGIv1.0 annot-version=v1.0 ATGGGTCGACCTTCGAACGCAAGGTCGTCGTTGCTGTGGTCGTTGTTGATCATTGTTGTAGTAATGGTAGCCACCGCCGCCGATGGGTCAACTCGGCCGC CGAAGGCGCCATGCTACTTCATTTTCGGAGACTCACTATTTGATAGTGGCAACAACAACAATCTCAACACCTTGAGCAAGGCTAATTACTCTCCTTACGG TGTTGGCTTCCCCGCCGGCAGACCAACCGGGAGGTTCTCCGACGGCCGTACCATCGCCGACATACTTGGTGAAGTCGTGGGATTTGAAAGCTTCATCCCA CCTTTTGCGTCCAATCCTAACGGATCGGAGTTACTCGCCGGAGTAAATTATGCATCAGCGTCGGCCGGAATTCTAGTGAAAAGTGGGAAACAAGGGGGTG ATAATGTAGACATGAGCAAACAACTGAGGAATCATGGCATGATTGTATCTAGTATAGTTGATGTTTTAGGAAGCAAAGAGTTGGCATGTCGCCATTTGGA AAAATGCTTGTACATATCCGATATGGGAAACAACGACTACATCAACAACTATTTTCTCCCGCAGTCTTCTAACATAAGGAAAATGTACAATCCGGAACAG TTTGCCACACTTCTCGTCGAGAAATATTCTCACCAAATTAAGAGGATGTACAAGTTGGGAGCAAGGAAAGTCGGGTTAGTCGGGGTGTCATCCGTAGGGT GCACCCCAGGTGTAATTGCGTCAGCCGGCAGGACAAATGGCTCGCTCTGTGCCGAGTCAATGAACCAATTAGTGACCCCGTTCAACGCCCGTCTCGGTTT GCTTATCGATAAGCTGAACGCCGATTTCCCTGGCGCAAAATTCGTGTACCTGAACTCTACATTGGCTAACCAACTTGCCATCCAAGCATTCAAAGTCAAA ACGGCGCCGTGCTGCAAAGTGAGTTCTGTTACGGGATTGTGCATCATGAACTCCGCTACGTGCAAGGCGAGACGGTCACATTTTTTCTGGGATGCATTCC ATCCGACCGAATCGTCGAACCGGCTCGTTGCGTATTTTTTCTATCAGGCTATCAAATCGATCTTGTGA
AA sequence Show only first row Show all	>Lus10002773 pacid=23164107 polypeptide=Lus10002773 locus=Lus10002773.g ID=Lus10002773.BGIv1.0 annot-version=v1.0 MGRPSNARSSLLWSLLIIVVVMVATAADGSTRPPKAPCYFIFGDSLFDSGNNNNLNTLSKANYSPYGVGFPAGRPTGRFSDGRTIADILGEVVGFESFIP PFASNPNGSELLAGVNYASASAGILVKSGKQGGDNVDMSKQLRNHGMIVSSIVDVLGSKELACRHLEKCLYISDMGNNDYINNYFLPQSSNIRKMYNPEQ FATLLVEKYSHQIKRMYKLGARKVGLVGVSSVGCTPGVIASAGRTNGSLCAESMNQLVTPFNARLGLLIDKLNADFPGAKFVYLNSTLANQLAIQAFKVK TAPCCKVSSVTGLCIMNSATCKARRSHFFWDAFHPTESSNRLVAYFFYQAIKSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002773 [exp]	0	1
AT5G52420			unknown protein		Lus10039249 [exp]	2.4	0.8503
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	6.0	0.8372
AT3G50685			unknown protein		Lus10026029 [exp]	6.1	0.8728
AT1G73820			Ssu72-like family protein (.1)		Lus10024545 [exp]	7.5	0.8243
AT3G14850		TBL41	TRICHOME BIREFRINGENCE-LIKE 41...		Lus10009209 [exp]	8.8	0.8167
AT2G29180			unknown protein		Lus10016512 [exp]	11.0	0.8633
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	14.7	0.8277
AT1G28610			GDSL-like Lipase/Acylhydrolase...		Lus10010208 [exp]	16.2	0.7730
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10014840 [exp]	17.9	0.8015
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10002312 [exp]	21.1	0.8312

Compare expression of checked genes

Lus10002773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.