Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 486 / 3e-173 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 481 / 3e-171 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29660 478 / 8e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 357 / 3e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 345 / 2e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G08460 323 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 312 / 1e-104 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 307 / 1e-102 GLIP7 GDSL-motif lipase 7 (.1) AT2G19010 290 / 2e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011998 [exp] 733 / 0 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 533 / 0 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 523 / 0 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 520 / 0 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 440 / 9e-155 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005413 [exp] 388 / 7e-135 AT1G29670 399 / 3e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015242 [exp] 363 / 2e-125 AT5G45670 369 / 7e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 352 / 1e-119 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10000893 [exp] 350 / 1e-119 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076500 [exp] 507 / 0 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 504 / 2e-180 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 375 / 3e-129 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 363 / 1e-124 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 362 / 2e-124 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 358 / 9e-123 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 357 / 2e-122 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 357 / 2e-122 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 357 / 2e-122 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 354 / 3e-121 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10002775 pacid=23164111 polypeptide=Lus10002775 locus=Lus10002775.g ID=Lus10002775.BGIv1.0 annot-version=v1.0 ATGGGATTCAGACTGAACAAACCATGCTGCTCTGCTTTGCTAATGCTGCACTGCTATCTTAATATAGTTGTCATAATTGCACATCAAGTTCCATGCTACT TCATATTCGGAGATTCGCTCATTGACAACGGCAATAACAACCTCATCGGCACTCTAGCCAAAGCCAACTATCCCCCCTACGGGATAGACTTCCCAGGCGG TCCCACGGGGAGGTTCTCCAACGGCAAAACCACCGTCGATGTTACCGCTGAGCTGCTAGGTTTCGAAAGCTACATCCCGCCTTACACTACTTCAAGTGGG GAGCAGGTGTTGAAGGGTGTGAACTATGCTTCTGCGGCAGCTGGGATTCGGGAAGAGACCGGGAGGCAGCTGGGAGAGAGGATCAGCTTCGCTGCCCAGG TTAAGAACTATGTGAACACCGTGTCGCAGATTGTGAGGTTGCTTGGAAGCGAAGAAAGTGCAGCGAACCACTTAAAGAAGTGCATTTTCTCGGTGGGGAT GGGGAGCAATGACTATCTCAATAATTACTTCATGCCCTGGTTTTACCCCACTGGGGCCCAGTACACCCCCGAGCAGTTTGCTGATGACCTCATCGAACAA TACACCGAGCAACTCAAGATTTTGTACAACTACGGGGCGAGGAAGTTTGTGCTGAATGGAGTCGGACAAGTCGGTTGCAGCCCGAATCAATTGGCTAGCC AAAGTCCAAACGGGAAGACATGCGTCAAGAATGTCGACTCGGCGATCCAGATCTTCAACAAGAAGCTCCGATCGCGAGTCGATCAGTTGAACGACAAGAC CCCAGACGCCAAACTCACATTCATAGACGTCTTTGGAATCTTCAAGGACTTGATCAACCACCCTCAAGACTACGGGTTTACGGTGAAGGATGCGGCCTGC TGTGGGGTGGGGAGGAACAACGGCCAGATTACGTGTTTGCCCTTTCAGTTTCCGTGCCAGAATAGGAATCAATACTTGTTCTGGGATGCTTTCCATCCTA CGGAGGCGGTCAACGCTTTCGTCGCGAAGCGGTCTTACAATGCTGAATCTTCTTCGGATGCTCATCCTTATGATATTCGCCGTCTTGCTGACCTGTAA
AA sequence Show only first row Show all	>Lus10002775 pacid=23164111 polypeptide=Lus10002775 locus=Lus10002775.g ID=Lus10002775.BGIv1.0 annot-version=v1.0 MGFRLNKPCCSALLMLHCYLNIVVIIAHQVPCYFIFGDSLIDNGNNNLIGTLAKANYPPYGIDFPGGPTGRFSNGKTTVDVTAELLGFESYIPPYTTSSG EQVLKGVNYASAAAGIREETGRQLGERISFAAQVKNYVNTVSQIVRLLGSEESAANHLKKCIFSVGMGSNDYLNNYFMPWFYPTGAQYTPEQFADDLIEQ YTEQLKILYNYGARKFVLNGVGQVGCSPNQLASQSPNGKTCVKNVDSAIQIFNKKLRSRVDQLNDKTPDAKLTFIDVFGIFKDLINHPQDYGFTVKDAAC CGVGRNNGQITCLPFQFPCQNRNQYLFWDAFHPTEAVNAFVAKRSYNAESSSDAHPYDIRRLADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	0	1
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	2.0	0.9720
					Lus10032472 [exp]	4.2	0.9645
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	4.5	0.9573
AT3G08030			Protein of unknown function, D...		Lus10019727 [exp]	5.1	0.9356
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	5.5	0.9639
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	6.3	0.9628
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	8.1	0.9558
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	8.5	0.9535
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	8.8	0.9549
AT5G01700			Protein phosphatase 2C family ...		Lus10014231 [exp]	9.6	0.9105

Compare expression of checked genes

Lus10002775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.