Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54860 81 / 1e-17 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038698 [exp] 85 / 5e-19 AT3G54860 654 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10037969 [exp] 84 / 2e-18 AT3G54860 650 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10031359 [exp] 71 / 2e-14 AT3G03210 410 / 2e-143 unknown protein Lus10010965 [exp] 70 / 7e-14 AT3G03210 404 / 4e-141 unknown protein Lus10007384 [exp] 47 / 3e-06 AT3G03210 432 / 4e-152 unknown protein Lus10020802 [exp] 46 / 1e-05 AT3G03210 436 / 1e-153 unknown protein Lus10007300 [exp] 43 / 7e-05 AT3G54860 179 / 1e-51 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226600 [exp] 92 / 1e-21 AT3G54860 929 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.008G035600 [exp] 88 / 3e-20 AT3G54860 968 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10002776 pacid=23164105 polypeptide=Lus10002776 locus=Lus10002776.g ID=Lus10002776.BGIv1.0 annot-version=v1.0 ATGAATGTTCAGCGGGAATCAAGGAGCAATTGGCTAACTATTAAGCGTGCTTTGCAACTTCTCGTTGAACATACTGACACTGCCAACCCCAATGACATTG CATATTTCTTCTCTGGGTATGCATCATTGAGTGTTCGACTAGTTCAGATGCAATTCGATCTGGATGGTGAGCTTAGTTTTCTAGTGGCTGATGGAAGAAC ATCCCTCGTACTCGTTGTATTTTTAGGAGGGGTAACATTTGCTGAAATCGCTGCATTGCGATTTCTCAGTGCTCAGTTTTTCCATATAAATAATGGTTCA GTCGAGCTGGATGCTTCTATTTTGGTTGCTCAACAACAAGAAGGGAGAAAAATGAAGCAGCCACTGAATTCAAGCATTGCTATCATCCCCTGGGATCTGA AAGGAGAATCCAGCATTCATTTCCGCCATGTCTGGCGGAATGCAGCTGGGACTGTTCCTCACCTGCATTGTGCTGTTCGTCCCCATGGTGATGGCCGGCT GGCACTTGAGCCGCAACAAGATGCCCTTCTTCAGCGCGCTCTCTTCATTTCTCTCGCGTTCTCCAATTTCTTCTCGTACTCCTCTTCTTCAAACTTGCCG GAGAAGGAAACAGAAACAGAGAGCAGGAGAGAATGA
AA sequence Show only first row Show all	>Lus10002776 pacid=23164105 polypeptide=Lus10002776 locus=Lus10002776.g ID=Lus10002776.BGIv1.0 annot-version=v1.0 MNVQRESRSNWLTIKRALQLLVEHTDTANPNDIAYFFSGYASLSVRLVQMQFDLDGELSFLVADGRTSLVLVVFLGGVTFAEIAALRFLSAQFFHINNGS VELDASILVAQQQEGRKMKQPLNSSIAIIPWDLKGESSIHFRHVWRNAAGTVPHLHCAVRPHGDGRLALEPQQDALLQRALFISLAFSNFFSYSSSSNLP EKETETESRRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10002776 [exp]	0	1
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10043023 [exp]	1.4	0.9395
AT1G69180	YABBY	CRC	CRABS CLAW, Plant-specific tra...		Lus10036811 [exp]	4.5	0.9166
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017717 [exp]	9.0	0.7953
AT2G23640		RTNLB13	Reticulan like protein B13 (.1...		Lus10039905 [exp]	16.4	0.8527
AT5G03795			Exostosin family protein (.1)		Lus10025178 [exp]	24.1	0.7773
AT5G41460			Protein of unknown function (D...		Lus10018123 [exp]	27.6	0.8662
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10001543 [exp]	34.5	0.8281
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008921 [exp]	35.4	0.8506
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040201 [exp]	35.5	0.7314
					Lus10024490 [exp]	44.2	0.7226

Compare expression of checked genes

Lus10002776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.