Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45670 548 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 541 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 524 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 489 / 5e-174 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 368 / 3e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 338 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G08460 322 / 4e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 310 / 1e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 298 / 4e-99 GLIP7 GDSL-motif lipase 7 (.1) AT2G19010 288 / 3e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011997 [exp] 741 / 0 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 521 / 0 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 517 / 0 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 483 / 1e-171 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 473 / 2e-167 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005413 [exp] 463 / 6e-164 AT1G29670 399 / 3e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015242 [exp] 410 / 1e-143 AT5G45670 369 / 7e-128 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 350 / 1e-118 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10000893 [exp] 345 / 4e-117 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064500 [exp] 565 / 0 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 563 / 0 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 368 / 3e-126 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 362 / 4e-124 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 362 / 5e-124 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 358 / 2e-122 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 355 / 2e-121 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 355 / 2e-121 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008902 [exp] 355 / 3e-121 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 355 / 3e-121 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10002777 pacid=23164101 polypeptide=Lus10002777 locus=Lus10002777.g ID=Lus10002777.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCATCCAAATCTGTGAAATCCCCATTTACCAGTTGGGTGGCGGCACTACCAACAGTCGCTGTAGCTCTGTACTTCAGCCTTGTTGCCAATG CGCAACAAGTACCGTGCTACTTCATATTCGGGGACTCCTTGGTCGACAATGGCAACAACAACCAGCTCCAGTCTTTGGCTAGAGCCGACTACTTGCCCTA CGGGATCGACTTCCAGGGCGGCCCTTCCGGCCGCTTCTCCAACGGCAAAACCACCGTCGATGTCATCGCTAACCCACAAACTTCCAACATGGCCAATGCA GCCGAGCAGCTAGGATTCGACGACTACATCCCACCATACGTCGAAGCCAGAGGACAATCAATCCTCCGAGGCATAAACTACGCCTCTGCCGCAGCTGGAA TCCGAGAAGAAACCGGACGACAACTCGGAGGAAGAATCAGCTTCAGCGGCCAAGTGAAAAACTACGTAACAACAGTCTCACAAATCGTTGACTTACTCGG AGACGAAGACTCCGCCGCCAACCATCTAAGCCAATGCATCTACTCGATCGGACTAGGAAGCAACGACTACTTAAACAACTACTTCATGCCTCAGTTCTAC AACACCGGCAGCCAGTTCACCCCCGAGCAGTACGCCGACGACCTCATCGACAAGTACACCCAGCAGCTCCAGATAATGTACCACAACGGCGCCAGGAAGT TCGTCATCATCGGTATCGGTCAGATCGGTTGCAGCCCCAGCGAGCTCGCGCAGAACAGCCCCGACGGCAAGACTTGTGTGCAGAGGATTAATTCTGCCAA CACCATTTTTAATAACAAGCTTCGAGCTTTAGTTGACCAGTTCAATGGAAACACCCCTGATGCGAAGTTTATTTACATCAATGCTTATGGGATCTTTCAG GACTTGATCAACAACCCTGCTGCTTTCGGGTTTAGAGTGACGAACGCTGGATGCTGTGGGATAGGGAGGAACAACGGGCAGATTACGTGCTTGCCGTACC AGACGCCGTGTCAAAATCGGGACGAGCATTTGTTTTGGGATGCTTTCCATCCGACGGAAGCAGCAAATATCGTGATCGGACGGAGGTCTTACAGCGCTGA GTCGCCGTCGGATGCTCATCCGTACGACATTCGACGGCTTGCTCAGGTTTGA
AA sequence Show only first row Show all	>Lus10002777 pacid=23164101 polypeptide=Lus10002777 locus=Lus10002777.g ID=Lus10002777.BGIv1.0 annot-version=v1.0 MAAASKSVKSPFTSWVAALPTVAVALYFSLVANAQQVPCYFIFGDSLVDNGNNNQLQSLARADYLPYGIDFQGGPSGRFSNGKTTVDVIANPQTSNMANA AEQLGFDDYIPPYVEARGQSILRGINYASAAAGIREETGRQLGGRISFSGQVKNYVTTVSQIVDLLGDEDSAANHLSQCIYSIGLGSNDYLNNYFMPQFY NTGSQFTPEQYADDLIDKYTQQLQIMYHNGARKFVIIGIGQIGCSPSELAQNSPDGKTCVQRINSANTIFNNKLRALVDQFNGNTPDAKFIYINAYGIFQ DLINNPAAFGFRVTNAGCCGIGRNNGQITCLPYQTPCQNRDEHLFWDAFHPTEAANIVIGRRSYSAESPSDAHPYDIRRLAQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002777 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	2.4	0.9280
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10033561 [exp]	5.3	0.9048
AT4G38840			SAUR-like auxin-responsive pro...		Lus10038193 [exp]	8.2	0.8490
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	8.7	0.8804
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	9.3	0.8814
AT4G30400			RING/U-box superfamily protein...		Lus10008899 [exp]	9.4	0.8687
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	9.9	0.8678
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	10.1	0.8783
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	10.5	0.8667
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012868 [exp]	13.2	0.8736

Compare expression of checked genes

Lus10002777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.