Plant FIBer expression Database

Lus10002778 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45660 163 / 3e-50 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G076600
[exp]
195 / 8e-63 AT5G45660 178 / 5e-56 unknown protein
PFAM info
Representative CDS sequence
>Lus10002778 pacid=23164115 polypeptide=Lus10002778 locus=Lus10002778.g ID=Lus10002778.BGIv1.0 annot-version=v1.0
ATGGTTCGATCACGACCACCGCCGTCTTCTTCGCTCTTTCTCCTCCTCCTCCTCCTCTTCTTCCGCCACCTCACAACCACCGCGTCCGCCATCTCCGCTT
TCCCATCCTACTCAGCCTGCAAAACCGCGGTCTCCATCTCCCACTCGCTCCTCACCCGCGTCTCCAACCTACGCGCAGCTCGCGGCGACTACTCCGGCGC
CGCCCGCGCCAAAGCGATTGCCGAGAAACTCGATCGTGGTCTGGTGCTTGGTCTCTCGGGATTCGCCTGGTCGATCGGATGGGACTACGCAAGAAATTAC
GCCTGGAACGGAATCGATTACAGGGAGCTACTCGGCACCGTATCGGATCTGAATGAGCTAATGTCCTTCCTCGCCGGACTCGGGTCCGCCAGATCGGAGG
CGGATAAGGCAGCTTGGATCATGAGAAATTACGGAAGTCTCTCGAGGGCTGCCAAGTCAGCGCTGGGTCGGTTGCTGAACACCTTCAACAAGAAGGGGGC
GTTGAAGGAAGTGGTGGAGACGGTGCAGAAGGAAGTGGTGGAAGGAGGGTTGCTGAGGGACTGTGTGGAGATCGGCGGCAATGATCTGCGGGGGTTGATT
GGGATTTTGAAAGACTGTGCTTCACAGTTTTATTCCAGGTCGGGTTATTCCGAGCTTTGA
AA sequence
>Lus10002778 pacid=23164115 polypeptide=Lus10002778 locus=Lus10002778.g ID=Lus10002778.BGIv1.0 annot-version=v1.0
MVRSRPPPSSSLFLLLLLLFFRHLTTTASAISAFPSYSACKTAVSISHSLLTRVSNLRAARGDYSGAARAKAIAEKLDRGLVLGLSGFAWSIGWDYARNY
AWNGIDYRELLGTVSDLNELMSFLAGLGSARSEADKAAWIMRNYGSLSRAAKSALGRLLNTFNKKGALKEVVETVQKEVVEGGLLRDCVEIGGNDLRGLI
GILKDCASQFYSRSGYSEL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G45660 unknown protein Lus10002778
[exp]
0 1
AT5G56340 ATCRT1 RING/U-box superfamily protein... Lus10013397
[exp]
4.2 0.8809
AT1G07710 Ankyrin repeat family protein ... Lus10025287
[exp]
4.6 0.8652
AT3G07680 emp24/gp25L/p24 family/GOLD fa... Lus10022525
[exp]
7.5 0.8545
AT5G13160 PBS1 avrPphB susceptible 1, Protein... Lus10015756
[exp]
8.5 0.8532
AT4G29960 unknown protein Lus10001629
[exp]
8.9 0.8734
AT4G31750 WIN2 HOPW1-1-interacting 2 (.1) Lus10026239
[exp]
9.4 0.8608
AT5G18610 Protein kinase superfamily pro... Lus10023473
[exp]
9.5 0.8389
AT3G62790 NADH-ubiquinone oxidoreductase... Lus10021691
[exp]
10.8 0.8108
AT1G07080 Thioredoxin superfamily protei... Lus10026384
[exp]
11.2 0.8602
AT5G28040 GeBP DNA-binding storekeeper protei... Lus10000940
[exp]
13.2 0.8562

Lus10002778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.