Plant FIBer expression Database

Lus10002779 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G29660 235 / 2e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT5G45670 233 / 2e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT1G29670 231 / 7e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT4G18970 227 / 3e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
AT1G33811 183 / 5e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT1G71691 156 / 1e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
AT2G19060 155 / 1e-45 SGNH hydrolase-type esterase superfamily protein (.1)
AT5G15720 154 / 9e-45 GLIP7 GDSL-motif lipase 7 (.1)
AT2G19050 153 / 1e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
AT2G19010 147 / 3e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011996
[exp]
370 / 2e-129 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10011997
[exp]
251 / 2e-82 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10002777
[exp]
246 / 3e-80 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10011998
[exp]
240 / 3e-78 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10002775
[exp]
237 / 5e-77 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10041847
[exp]
236 / 1e-76 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10005413
[exp]
231 / 4e-75 AT1G29670 399 / 3e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10015842
[exp]
177 / 6e-54 AT5G45670 325 / 7e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10032316
[exp]
174 / 3e-52 AT1G29660 277 / 7e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G064500
[exp]
237 / 5e-77 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.011G076500
[exp]
230 / 2e-74 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.011G076400
[exp]
192 / 1e-59 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.013G102400
[exp]
186 / 2e-57 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.019G008904
[exp]
178 / 2e-55 AT4G18970 246 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Potri.019G008100
[exp]
180 / 3e-55 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.019G008402
[exp]
180 / 4e-55 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.019G008000
[exp]
180 / 4e-55 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.019G008406
[exp]
179 / 9e-55 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Potri.019G008906
[exp]
178 / 3e-54 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0264 SGNH_hydrolase PF00657 Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence
>Lus10002779 pacid=23164116 polypeptide=Lus10002779 locus=Lus10002779.g ID=Lus10002779.BGIv1.0 annot-version=v1.0
ATGACACCCAGACACGTGGCATCGTTTCTGCTGACCAATGTATGTCTTCACACAGTAATGTTCCTAAAGCAATATCATCTCAGTTTCGCAGCCGCTAATC
CACGTCAGCAAGTCCCCTGCTACTTCATCTTCCGCGACTCTCTGGCCGACAACGGCAACAACAACCAATTCCCCTCGTTTGTGAGAGCTGATTACCCACC
TTACGGGATCGACTTCTCAAACCGAGTTGATTTTGTTGCAGAATTATTAGGATTCAACAGTTATTATATTCCTTCATACATTGCTACTGCCGGTAGTATT
GGAGATCAAGTGCACAAAAACATACTAAAAGGAGTGAACTATGCTTCAGGGGCTGCCGGGATTTGGGACGAGACAGGGTGCCGCCTGGGAGCCAGAGTCA
GCTTCAGTTGCCAGGTCAGCAACTACAAGTACACGGTGTCACGGATCGTTGACTATCTAGGTGGTGATGATGTGGCGGCGGCTAAGCACTTGAGCAAGTG
TATTTACTCGATTGGATTAGGGAGCAATGACTATTTGAATAATTACTTCATGCCTCTGATTTACTCCACCGCATTGGAGTTCACTCCTGAGTATGCTGAT
GATCTTATTCGGATTTACACTAGTCAGCTCCAAATTATGTACAAGTATGGAGCGAGGAATTTTGTGCTGTATGGGTTGGGACTGGTCGGTTGCAACCCGA
ATGAACTGACTCAAAATAGCGTTGACGGTTAA
AA sequence
>Lus10002779 pacid=23164116 polypeptide=Lus10002779 locus=Lus10002779.g ID=Lus10002779.BGIv1.0 annot-version=v1.0
MTPRHVASFLLTNVCLHTVMFLKQYHLSFAAANPRQQVPCYFIFRDSLADNGNNNQFPSFVRADYPPYGIDFSNRVDFVAELLGFNSYYIPSYIATAGSI
GDQVHKNILKGVNYASGAAGIWDETGCRLGARVSFSCQVSNYKYTVSRIVDYLGGDDVAAAKHLSKCIYSIGLGSNDYLNNYFMPLIYSTALEFTPEYAD
DLIRIYTSQLQIMYKYGARNFVLYGLGLVGCNPNELTQNSVDG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G29660 GDSL-like Lipase/Acylhydrolase... Lus10002779
[exp]
0 1

Lus10002779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.