Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45650 867 / 0 subtilase family protein (.1) AT5G45640 684 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT2G04160 574 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 559 / 0 ATSBT5.4 Subtilase family protein (.1) AT5G67360 536 / 1e-180 ARA12 Subtilase family protein (.1) AT4G34980 501 / 6e-167 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 501 / 1e-166 Subtilase family protein (.1) AT3G14240 493 / 9e-164 Subtilase family protein (.1) AT5G51750 486 / 8e-161 ATSBT1.3 subtilase 1.3 (.1) AT2G05920 475 / 7e-157 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007083 [exp] 1069 / 0 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10020458 [exp] 1058 / 0 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10026062 [exp] 936 / 0 AT5G45650 857 / 0.0 subtilase family protein (.1) Lus10016064 [exp] 561 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039085 [exp] 555 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 552 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 550 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 548 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10023048 [exp] 541 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076700 [exp] 944 / 0 AT5G45650 970 / 0.0 subtilase family protein (.1) Potri.001G468800 [exp] 605 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 601 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 580 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G469000 [exp] 569 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.001G468900 [exp] 564 / 0 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.009G144500 [exp] 546 / 0 AT5G59810 508 / 9e-170 Subtilase family protein (.1) Potri.006G001600 [exp] 545 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1) Potri.005G067200 [exp] 540 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.009G133400 [exp] 531 / 3e-178 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10002780 pacid=23164103 polypeptide=Lus10002780 locus=Lus10002780.g ID=Lus10002780.BGIv1.0 annot-version=v1.0 ATGATGAGGAACGTCATCTTTTCCCTCCTCGTTTCCCTTTCAATTCTTCTCATTTCCCCACTCTTAGCAACATGCGATGAGCATCAAAAGAACTACATAG TCTACTTTGGTGAGCACACTGGCGAGAGAACCGCCGACGAAATCTTAGAAACCCACCACTCGTACTTGTCGTCGGTCAAGGAAACTGTAGAGGAAGCCAA AACTTCCCTCATTTACAGCTACAAGCATACCATCAACGGATTCGCTGCTTCCCTCACCCCTCAACAAGCCTCCCAACTCAATGAGCTGGAGGAAGTGGTG TCGGTGATTGAGAGCCGCCCGTACAAGACCCACACGACAAGGTCGTGGGAGTTTGCGGGGCTCAACGAGGCGGCTGCTTATAATCCTTCATTATTGGCAC CGCGGTTCGGATCCGGAAAGGATACCTTGATGAATGAGGATTTGTTGCATAGAGCTGAATATGGGAAATCCGTCATTGTTGGAGTCCTTGACAGCGGGAT TTGGCCGGAGGCAAAGAGCTTTAGCGACGAAGGGATGGACCCGATTCCAGAGACGTGGAAGGGAATCTGTCAAACTGGACAAGAATTCAACTCTTCTCAT TGTAACAAAAAAATCATTGGAGCAAGATACTACCTCAAGGGCTTCGAGCGCTACTACGGCAAACTAAACGCCACGGAGGACTACAGGTCACCACGTGACA AGGACGGCCACGGGACCCACGTGGCCTCGATAGCCGTCGGGCGCCAGGTGGGCAACGCGTCGGCATTCGGCGGGTTCGCCCGCGGGACAGCTTCCGGCGG GGCTCCGTTGGCCCGACTCTCCGTTTACAAAGTCTGCTGGCCGTCCCCCGGTCAGGAGAAGGCCATGGGCAACGTCTGCATCCAGGAGGACATGCTGGCG GCGATGGACGATGCGATCGCCGACGGAGTCCACGTCATTAGTATTTCTATAGGGTCGGATGACTTGCTCAAGCATACCGACGATGCGATTTCGATAGGTG CTTTCCACGCGCTGAAGAAGAATGTTGTTGTGGCTTGCAGCGCTGGCAACTCCGGCCCCACTCCTGCCTCGCTGTCGAATCCTGCGCCGTGGATTGTTAC CGTCGGGGCTAGCAGCGTTGATCGTGCTTTCTTGGGATCCGTTGTGCTTGGAAATGGCAAAGTGATTACGGGGCAAACAGTGACACCATACAAGCTACCC ACCTCCCTCCCACTAATCTACGCATCAGACGCATCCCAGCCATGGGTCAAACCGAACGAAACCAACCAATGTCTACCCAACTCGCTCTCACCGGAAAAGG TCAAGGGTAAAATAGTCCTCTGCATCAGAGGCACACTCTTCCGAGTCATGAAAGGTATGGAAGTCAAACGAGCAGGCGGGGCGGGTTTCATCCTCGGGAA TAGTGCCGAATTCGGAGATAGTGTTTACTTAGAGCCCCACGTCCTCCCCACAACGGCGTTGTCGTACAAGGACACGATCGAGGTCATCAACTACATCAAT TCGACTAATAACAACGCCACAGCCAGCCTGGTCGAACCGAAAACGGTTTTTGGGTTCGGACCGGCTCCTTTTATGGCCGGGTTCACTAGTCGGGGTCCGA ACATTGTTCACCCTTCGGTCCTTAAGCCTGATATTACCGCTCCCGGATTGAATATATTGGCGGCGTGGAGCGAAACGTCGCCGCCTAGTAAAATATCTGA AGACGGTAGAGTTGTGAAGTACAATTTCGATTCGGGGACGTCGATGTCGTGTCCGCATGTTGCTGGGTTAGCTGCACTCGTTAAGGCTATTCATCCTACT TGGAGCACTGCTGCCATAAGATCTGCCATCATGACTACAGCAACGGTAAAGAACAACAAGGGTGAGGAAATATCGGACCAATCAGGGGACAAAGCGACAC CGTTTGAATACGGGTCGGGCCACTTTCGCCCCTCGAAAGCAGCCGACCCGGGTCTGGTATATGACGCGTCGTATGTAGACTACATGCTCTACCTATGCAG CTACGGAGTGAAGAATGCCGACACGAAATTCAACTGCCCCAAATCTTTGCCAACGACGTACGACCTTAATTACCCGTCTGTGTCGGTTACGAAGCTGAAC GGAAGTGTCACTGTGAAGAGGACGGTGACGAATGTAGTCGGGAAGGCGGTGTATGTCTTTGGGGCGAAAGCGCCGGTGGGGTTGTCGGTGAAGGCGCGGC CGAGGATTTTGGAGTTCGATGGGGTTGGAGAGAGGAAGAGCTTCGAATTGACGATTAGGGTGAGGAACTTGACCAAGGCGAAGGCGGGTCTGAGAGACGG GTTCGGATTCGGGTCGTTTAGTTGGAGGGATGATTACCATGTTGTTAGGAGCCCAATTGTGGTATCTCTAGCTTAG
AA sequence Show only first row Show all	>Lus10002780 pacid=23164103 polypeptide=Lus10002780 locus=Lus10002780.g ID=Lus10002780.BGIv1.0 annot-version=v1.0 MMRNVIFSLLVSLSILLISPLLATCDEHQKNYIVYFGEHTGERTADEILETHHSYLSSVKETVEEAKTSLIYSYKHTINGFAASLTPQQASQLNELEEVV SVIESRPYKTHTTRSWEFAGLNEAAAYNPSLLAPRFGSGKDTLMNEDLLHRAEYGKSVIVGVLDSGIWPEAKSFSDEGMDPIPETWKGICQTGQEFNSSH CNKKIIGARYYLKGFERYYGKLNATEDYRSPRDKDGHGTHVASIAVGRQVGNASAFGGFARGTASGGAPLARLSVYKVCWPSPGQEKAMGNVCIQEDMLA AMDDAIADGVHVISISIGSDDLLKHTDDAISIGAFHALKKNVVVACSAGNSGPTPASLSNPAPWIVTVGASSVDRAFLGSVVLGNGKVITGQTVTPYKLP TSLPLIYASDASQPWVKPNETNQCLPNSLSPEKVKGKIVLCIRGTLFRVMKGMEVKRAGGAGFILGNSAEFGDSVYLEPHVLPTTALSYKDTIEVINYIN STNNNATASLVEPKTVFGFGPAPFMAGFTSRGPNIVHPSVLKPDITAPGLNILAAWSETSPPSKISEDGRVVKYNFDSGTSMSCPHVAGLAALVKAIHPT WSTAAIRSAIMTTATVKNNKGEEISDQSGDKATPFEYGSGHFRPSKAADPGLVYDASYVDYMLYLCSYGVKNADTKFNCPKSLPTTYDLNYPSVSVTKLN GSVTVKRTVTNVVGKAVYVFGAKAPVGLSVKARPRILEFDGVGERKSFELTIRVRNLTKAKAGLRDGFGFGSFSWRDDYHVVRSPIVVSLA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45650			subtilase family protein (.1)		Lus10002780 [exp]	0	1
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	2.6	0.9601
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	4.7	0.9573
AT4G33040			Thioredoxin superfamily protei...		Lus10024982 [exp]	4.9	0.9465
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	4.9	0.9540
					Lus10017869 [exp]	5.3	0.9453
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	5.5	0.9546
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10026956 [exp]	8.5	0.8906
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10001914 [exp]	8.7	0.9506
AT5G52390			PAR1 protein (.1)		Lus10016450 [exp]	8.9	0.9447
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10028695 [exp]	11.0	0.9191

Compare expression of checked genes

Lus10002780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.