Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29630 633 / 0 5'-3' exonuclease family protein (.1.2.3) AT1G18090 286 / 2e-87 5'-3' exonuclease family protein (.1.2) AT5G26680 96 / 8e-21 5'-3' exonuclease family protein (.1.2) AT3G28030 71 / 2e-12 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT2G02550 54 / 3e-08 PIN domain-like family protein (.1.2) AT1G01880 48 / 2e-05 5'-3' exonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011991 [exp] 1217 / 0 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10004608 [exp] 583 / 0 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3) Lus10027250 [exp] 271 / 5e-82 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2) Lus10038958 [exp] 157 / 4e-42 AT1G18090 315 / 5e-103 5'-3' exonuclease family protein (.1.2) Lus10000270 [exp] 82 / 2e-16 AT5G26680 512 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039424 [exp] 72 / 1e-12 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10041375 [exp] 53 / 1e-06 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10039423 [exp] 45 / 0.0001 AT3G28030 269 / 3e-82 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077001 [exp] 716 / 0 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3) Potri.015G041400 [exp] 288 / 4e-88 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.013G000700 [exp] 93 / 6e-20 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.017G070500 [exp] 69 / 8e-12 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.014G077300 [exp] 45 / 0.0003 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region CL0280 [flax] [poplar] PIN PF00752 [flax] [poplar] XPG_N XPG N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10002782 pacid=23164113 polypeptide=Lus10002782 locus=Lus10002782.g ID=Lus10002782.BGIv1.0 annot-version=v1.0 ATGGGGATACAGGGGCTTTTGCCCCTTCTGAAGTCCACGATGCAATCGTTCCACATTAAAGAGTTACAAGGCTGTTCCGTCGCCGTTGATACTTACTCAT GGCTTCACAAGGGTGCATTTTCCTGTAGCACTCAGCTCTGCAAAGGGCTGCCCACTTCAAGGCACATTGAGTACTGTATGCACAGGGTGAATTTGCTGAG GCATTATGGTGTTAAACCTGTTCTCGTCTTTGATGGAGGCTTTCTGCCTATGAAGCTTGAACAAGAGAATAAACGTGCAAGGTCAAGAAAGGAAAACCTT TCTCGTGCTATTGAGCACGAGTCAAACGGGAACTCGACTGCAGCTTATGAGTGCTACCAGAAGGCTGTTGACATATCGCCTTCTATCGCACATGATCTGA TCCAGGTCTTGAAGCAGGAAAATGTGCCGTATGTTGTAGCTCCTTATGAGGCGGATGCGCAGATGACATTCATGGCGTTAAATAAGCAAGTGGATGCAGT TATCACCGAGGACTCGGATCTCATAGCATTTGGATGCCCCAGGATCATATTCAAAATGGACAAGTATGGGCAAGGTGTCGAGTTTCAATTTTCCCGGCTT CAGAAGAACAAGGAATTATGTTTCGCTGGATTCACTAACCAAATGGTTTTGGAGATGTGCATTTTGAGTGGCTGTGACTATTTGCAGTCACTACCTGGAA TGGGCTTGAAAAGGGCGCACACATTAATCTCGAAATTTAAAACTTATGAGAAGGTAATCAAGCATTTGAAGTATAGCACTGTCTCTATTCCTCCTTTCTA TCAAGAATCATTCGGGAAAGCGATACTGACTTTCAAGCACCAACGAGTGTATGATCCTATTGCTGAGGATATTGTGCATTTGTCTGACATTCCAGAAAGT CAGGATGGTGATGTGGCCAGAGGTATTGCGGCTGGCGATTTGGATCCATTTACTCAGACGCCATTCCAGGAAAGCACTCCAAATTGTGCAGCTGTGACTA GTGGAACTTCAAAAGTGAAGAACTCTAAACCTGAAAGTATAGCCAAGAAGATAGATCTGCCGGTGCAGAAGAATCTCCTGACTAATTATTTCTGCTTTGC ATCAATTGAAGCTAAGAGAAAATTCAAGGCACCTCGGAAATCACCCACATGTTCAGTTTCAGTGGATAGCTCTTGCCTGAAAGAGTTTTGCTTCGTTGGA GCTGGTTCTGGCCGAATTAACTGCCCTTCATCATCTACTTCTGCCCCTGAAAATCATTCTAGCACGTCTACCTATACTATGATGGAAACCCTCACTGAGC CAAAGTTTGCGGAATATCCAAGTTCTGGTAACAGTGTTAACTTCTTCTTAACCAATTACATCATTGAAACATGCTTACAAAATTGGACAGAGGTAGAGAA ACCAAGCATAGGAGATATGCCTCTCAAAGCTTTTGTACAGTCACTTAATCAATCTGGCCAAGTTGTACTGAAGGAATGTGAGACCAAGACCAATCAAAAG CAACGAGCACAAGTAGCAGAGCGCAAAAAGGTCATCGTCAGGAGTCGTTACTTCCAGCACAAGTCCACCAATGATGAAAGCCAAGAGAATAAAGAGATGC ATAGGTCCAATGGCGATCATTTGAGCGTGACAAACGAAAAGGCTAGAGTGACCAGCCCTTATTTTGCACGAAATCCATCTCCGGACAGTTCCTTACAAGG GAATGTAGACAGTCACAAAGAAGATGAAACCACATTTCAAGACGGTGAAAAGAGTTCTAGTGAAGTTACTTTGAAAAGGAAGACTGTCCTGATTGACAAT GACAGCAGAAGATCCAAGTACTTCTGCACAAATGCATCTTCCCTTGTGGAGGACAGTGGTGGTTGCACTTCGCGTGAGTCTGATGAAGAAGAACCGACAG AGGAACGAACTGAGGGAGGGAAATTCGGAGCTAATATCAGGCATTTGGGTAGATATTCAGAGATAGCAGAGAAGTCGGTAGATAAATATGCGTCGATGCT TTCGTCTTTTAGATACTCGTCGTCGAATGGTTCTCGTGCTAGTGGTCTGAGAGCCCCTTTGAAGGACATTAAGAACACTAGTTGTACAACCAGTGCAAGG GTAACAACTGTTCCCGACTTCAGTGAGTTTGCTTATACTCCGAAGAACAAGGGGACTGCTACTGCATCATTTAAGAGACGATGA
AA sequence Show only first row Show all	>Lus10002782 pacid=23164113 polypeptide=Lus10002782 locus=Lus10002782.g ID=Lus10002782.BGIv1.0 annot-version=v1.0 MGIQGLLPLLKSTMQSFHIKELQGCSVAVDTYSWLHKGAFSCSTQLCKGLPTSRHIEYCMHRVNLLRHYGVKPVLVFDGGFLPMKLEQENKRARSRKENL SRAIEHESNGNSTAAYECYQKAVDISPSIAHDLIQVLKQENVPYVVAPYEADAQMTFMALNKQVDAVITEDSDLIAFGCPRIIFKMDKYGQGVEFQFSRL QKNKELCFAGFTNQMVLEMCILSGCDYLQSLPGMGLKRAHTLISKFKTYEKVIKHLKYSTVSIPPFYQESFGKAILTFKHQRVYDPIAEDIVHLSDIPES QDGDVARGIAAGDLDPFTQTPFQESTPNCAAVTSGTSKVKNSKPESIAKKIDLPVQKNLLTNYFCFASIEAKRKFKAPRKSPTCSVSVDSSCLKEFCFVG AGSGRINCPSSSTSAPENHSSTSTYTMMETLTEPKFAEYPSSGNSVNFFLTNYIIETCLQNWTEVEKPSIGDMPLKAFVQSLNQSGQVVLKECETKTNQK QRAQVAERKKVIVRSRYFQHKSTNDESQENKEMHRSNGDHLSVTNEKARVTSPYFARNPSPDSSLQGNVDSHKEDETTFQDGEKSSSEVTLKRKTVLIDN DSRRSKYFCTNASSLVEDSGGCTSRESDEEEPTEERTEGGKFGANIRHLGRYSEIAEKSVDKYASMLSSFRYSSSNGSRASGLRAPLKDIKNTSCTTSAR VTTVPDFSEFAYTPKNKGTATASFKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29630			5'-3' exonuclease family prote...		Lus10002782 [exp]	0	1
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	1.7	0.8519
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	2.4	0.8788
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10001185 [exp]	3.9	0.8323
AT2G37690			phosphoribosylaminoimidazole c...		Lus10005526 [exp]	6.6	0.8111
					Lus10017515 [exp]	8.1	0.8643
AT5G47380			Protein of unknown function, D...		Lus10007795 [exp]	12.7	0.7995
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10006315 [exp]	13.9	0.8251
AT2G01905		CYCJ18	cyclin J18 (.1)		Lus10031940 [exp]	14.0	0.7771
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	21.0	0.7768
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	22.4	0.8405

Compare expression of checked genes

Lus10002782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.