Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14770 218 / 5e-70 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT1G21460 161 / 1e-47 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT5G53190 134 / 5e-37 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT5G62850 127 / 8e-35 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT4G10850 122 / 9e-33 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT5G13170 117 / 2e-30 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT3G28007 115 / 3e-30 SWEET4, AtSWEET4 Nodulin MtN3 family protein (.1) AT5G40260 114 / 3e-30 SWEET8, AtSWEET8 Nodulin MtN3 family protein (.1.2) AT1G66770 110 / 2e-28 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT5G23660 111 / 3e-28 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011990 [exp] 360 / 7e-126 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1) Lus10015245 [exp] 288 / 2e-97 AT3G14770 269 / 3e-91 Nodulin MtN3 family protein (.1) Lus10005411 [exp] 271 / 8e-91 AT3G14770 258 / 2e-87 Nodulin MtN3 family protein (.1) Lus10028634 [exp] 160 / 2e-47 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1) Lus10018932 [exp] 160 / 3e-47 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10003200 [exp] 149 / 8e-43 AT4G10850 255 / 1e-85 Nodulin MtN3 family protein (.1) Lus10017302 [exp] 146 / 8e-42 AT4G10850 254 / 4e-85 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 132 / 2e-36 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10032426 [exp] 130 / 2e-35 AT4G10850 254 / 7e-85 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355500 [exp] 249 / 3e-82 AT3G14770 231 / 2e-76 Nodulin MtN3 family protein (.1) Potri.001G383000 [exp] 221 / 2e-71 AT3G14770 251 / 1e-84 Nodulin MtN3 family protein (.1) Potri.011G103600 [exp] 219 / 1e-70 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 162 / 6e-48 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 160 / 2e-47 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 160 / 2e-47 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 160 / 2e-47 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 137 / 1e-38 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Potri.003G143100 [exp] 134 / 2e-37 AT4G10850 262 / 4e-88 Nodulin MtN3 family protein (.1) Potri.001G344300 [exp] 128 / 3e-35 AT3G28007 239 / 2e-79 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10002783 pacid=23164104 polypeptide=Lus10002783 locus=Lus10002783.g ID=Lus10002783.BGIv1.0 annot-version=v1.0 ATGACCCAGATGGCTATCTTTACTGGGCTCTCTTCAATCTACTCAGTCCTCAGCGAGTCAGCTGGAGTCGCCGGAAATCTCTGTGCTTTCGTACTCTTCG TCTCACCGATACCAACGTTTAGGAGAATTATCAGGAACCAGTCAACGGAGCAGTTCTCTGGATTGCCGTACATATACTCTCTTTTGAACTGCTTGATTTG CCTTTGGTATGGGATGCCCTTCGTTTCCCCCAATATCATACTGGTCGCCACTGTCAATTCCATTGGGGCGGTCTTCCAGTTTGTCTACATAGCCATCTTC ATTGCCTATGCTGATAAAACCAAGAAGGTGAAGATGTCGGTGTTGCTAGGTGCGGTGTTTGTGTTGTTTGCTGCAATTGCCTTTGTGAGCTTGAAATTCA TGGAGTCTCACGTCAGGCAGTTGTTCATTGGATATTTGAGTGTCTTCTCTTTGATTTCCATGTTTGCTTCCCCACTTTTTATCATTAATCTGGTGATCAA GACTAGGAGTGTAGAATACATGCCGTTCTTCCTTTCGCTTGCAACATTCGTGATGAGCCTCTCGTTCTTAGCATATGGACTGCTCAAGGACGATACTTTC ATAACCGTGAAGATGTCGGTGTTGCTAGGTGCGGTGTTTGTGTTGTTTGCTGCAATTGCCTTTGTGAGCTTGAAATTCATGGAGTCTCACGTCAGGCAGT TGTTCATTGGATATTTGAGTGTCTTCTCTTTGATTTCCATGTTTGCTTCCCCACTTTTTATCATTAATCTGGTGATCAAGACTAGGAGTGTAGAATACAT GCCGTTCTTCCTTTCGCTTGCAACATTCGTGATGAGCCTCTCGTTCTTAGCATATGGACTGCTCAAGGACGATACTTTCATAACCGTACCGAATGGAATT GGTACGATTCTGGGGGTAGTTCAATTGGCACTGTACTACCACTACAGCAACAGATTCAGCGAAAACTCAAGAGAACCCTTGCTAGCAGAATTTGCATAA
AA sequence Show only first row Show all	>Lus10002783 pacid=23164104 polypeptide=Lus10002783 locus=Lus10002783.g ID=Lus10002783.BGIv1.0 annot-version=v1.0 MTQMAIFTGLSSIYSVLSESAGVAGNLCAFVLFVSPIPTFRRIIRNQSTEQFSGLPYIYSLLNCLICLWYGMPFVSPNIILVATVNSIGAVFQFVYIAIF IAYADKTKKVKMSVLLGAVFVLFAAIAFVSLKFMESHVRQLFIGYLSVFSLISMFASPLFIINLVIKTRSVEYMPFFLSLATFVMSLSFLAYGLLKDDTF ITVKMSVLLGAVFVLFAAIAFVSLKFMESHVRQLFIGYLSVFSLISMFASPLFIINLVIKTRSVEYMPFFLSLATFVMSLSFLAYGLLKDDTFITVPNGI GTILGVVQLALYYHYSNRFSENSREPLLAEFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10002783 [exp]	0	1
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10028966 [exp]	4.2	0.8424
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	11.8	0.8540
AT2G43190			ribonuclease P family protein ...		Lus10026483 [exp]	17.3	0.8361
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	18.3	0.8082
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	29.3	0.8088
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	30.9	0.8213
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10010851 [exp]	35.9	0.8248
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	36.8	0.8335
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10041539 [exp]	39.0	0.7923
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Lus10009495 [exp]	39.1	0.7821

Compare expression of checked genes

Lus10002783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.